Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq28 111 1e-19 >seq28 Length=897071 Score = 111 bits (122), Expect = 1e-19 Identities = 367/559 (66%), Gaps = 19/559 (3%) Strand=Plus/Minus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 |||||||| || |||||| || | ||||| ||||| ||| ||||| || || || Sbjct 62740 AATAAACAAGCGAAATCAGTGTGGAGGCCTTCATCTCTAGAAATGAGTTCATTGGAGAAG 62681 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 || || |||||||||||| | ||| |||||||| || || || || ||| Sbjct 62680 GTCAAACCGGGCATTAAAGAACGCTTCTTAAGCCAGAAGATGGCACAGAAACTACCACTG 62621 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 |||||||| ||||| | ||| ||||| || | | || ||| | | || | | ||| Sbjct 62620 AAGAATATACCTTCGATGGCAGCAAAAGCAATGAGTCTGGAAGCAA---AGTTATCGTTG 62564 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACG-CACGGA-ATTGTGTATA 4779 | || ||||| || | ||||| | ||| || || |||| | || ||| ||| || | | Sbjct 62563 TTATTGATCCACTTAAGAGCCCATTGAGCCTTCTTGTTAATGACAGGGACATTTTG-AGA 62505 Query 4780 TAGCGTT--AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAG 4837 || || ||| | || | |||||| | || | |||||| ||||| || | || Sbjct 62504 -GGCCTTGAAAAGGAATTCC--TTTTCAGTTTCATCCTTAATATAGGTGTCAATCAAAAG 62448 Query 4838 GCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGC 4897 | || ||||||| || |||||||| || ||||| | || || || ||| | ||| Sbjct 62447 GGAGTAAGTTTCAGAGTGGATATTTTCCATGGCAATTTAGAAACCATAGAAGGCACGAGC 62388 Query 4898 TTCTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 ||| | | ||| ||||| ||| ||| || | | |||||| || ||||| | Sbjct 62387 TTCGGGGATTTGGACTTC-ACACATGAATTACTCGGCGAGGTTTTCAAGGACGATACCAT 62329 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAA 5013 || || || || || || | |||| || |||| |||| ||||| ||| Sbjct 62328 CAGAAGCAGCGAAGAAAGCAAGGACATATTTAATGAAGTGACGTTCGTTGTCAG---TAA 62272 Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073 | || ||| | ||||||| | |||||||| ||| ||| ||||||| || || | Sbjct 62271 GACGTTCCCAATCCTTTAAATCTTGATATAAATCAATTTCGTCAGCAGTCCAGAAAGAAG 62212 Query 5074 CTTCCGCTTTTTTGTACAT 5092 | |||| |||||||| Sbjct 62211 CGAGTTCTTTCTTGTACAT 62193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047908483225