Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 232 9e-56 seq28 147 3e-30 >seq2 Length=2195051 Score = 232 bits (256), Expect = 9e-56 Identities = 491/729 (67%), Gaps = 4/729 (1%) Strand=Plus/Minus Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 ||||||||| |||||| || |||||||||||| |||||||||||| | |||||||| Sbjct 428872 TTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGGAAGTCCAGGGC 428813 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 ||||||| || ||||| | | ||| | ||||| | | |||| ||||| || |||| Sbjct 428812 ATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGAT 428753 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 | || ||||| || |||| |||| ||||| | ||| | |||||| || || ||||| Sbjct 428752 CGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCT 428693 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 | || | | || || || | || |||||||||||| ||||||| || | || | Sbjct 428692 TCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGG 428633 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 || || || ||| || ||||| | |||||| || || | ||| | || | | Sbjct 428632 AACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATTGAAGACACGGA 428573 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 ||| |||| || || ||||| | |||||||| || ||||||||| | || || | Sbjct 428572 GCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACTATCTCTAGCTC 428513 Query 78262 GAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTT 78321 |||||| || ||| | || || || ||||| ||||||| |||| ||| || | | Sbjct 428512 TGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAAAGCACATTGCT 428453 Query 78322 TCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAG 78381 | | || || || ||||| ||||| || | ||| | ||| | ||||| ||| Sbjct 428452 TAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAGTAAGAAACAACTAC 428393 Query 78382 ACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATT 78441 ||||| | | ||| |||| ||| || | || |||| ||||| || ||||| | Sbjct 428392 TCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATGAGTGAACCACT 428333 Query 78442 TTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTA 78501 ||||| | || ||| || || | || ||| | || | | |||||| || | Sbjct 428332 TTTCACTCATTAAATTATAAGTACGGAAGGCACTTTCCAAATCTCTCTTATGAATACCAA 428273 Query 78502 CCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACA 78561 | || | ||| ||||| | |||||||||||| | | ||| ||| | ||| || | Sbjct 428272 TAGAAACTCTCATTAACATTTATTGAGGTCTTTCAGCAATTTTACCATTCAATTTTAA-A 428214 Query 78562 AGTATGATT--TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTA 78619 || || | | ||| | ||| || |||||||| | | || | | | ||||| || || Sbjct 428213 AG-ATAACTACGTTCGAGAGTCTTGAAACCAAAGAAATCATAAGTATAATCTCTATCATA 428155 Query 78620 AATAATAAC 78628 | ||||||| Sbjct 428154 ATTAATAAC 428146 Score = 161 bits (178), Expect = 1e-34 Identities = 461/701 (66%), Gaps = 12/701 (2%) Strand=Plus/Minus Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 ||||| | ||||||||||| | || | | || || || |||| | | || | Sbjct 430034 GGATCAGAGATATGAATATTAAGAGATTAAGATTAGTCAATAAAAGGACTACGGCCAACA 429975 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 || | || ||||| | |||||||| | |||||||| ||||| | | || || ||| Sbjct 429974 GCGAGATTAATAATAGCCTTTTGAGATACTTCCCAAACTGTTTTATAGAGTTACTTAATA 429915 Query 77010 TCATCTGGAAGGTTTG-TATT--TTGAATGGAACCACCATCTGATATAATTGTATTCTTT 77066 ||||| |||| | | |||| ||||| || ||| | | | | | ||| || Sbjct 429914 TCATCGGGAATATCAGCTATTGTTTGAACAGAGCCATTGTAAGCAAGGAGTTAATTTTTA 429855 Query 77067 ATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATT 77126 || | |||||| | || || || ||||| || || ||||||||||| | Sbjct 429854 ATTGAAGGATTCCAAAGATTTCTTTCAATTAAATCTTAAACAAGATGAGGATTGATACAA 429795 Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||| |||| | |||||||| || |||| ||| ||||| ||||| | ||| Sbjct 429794 ACAAATTCACCAGCAAGGACTCTACGGGTATAAAGATTGGAAGTATAGGGTTCAAATGAT 429735 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || |||||||| | || ||||||||||| |||||||| || | ||| | | | Sbjct 429734 TCGCAATTACCCAAAATCTAAGAGGTAGAAGCAGTAGGCATAGGAGCAATCAAAAGAGAA 429675 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | | ||||||| ||||| | || | | | |||||| | | | || Sbjct 429674 TTACGCATACCATGTTCAACAATTTTTTTCTTCAAACCATCCCAATCGTATCCACCATAA 429615 Query 77307 ---GGTACAACATCCCAAAGATCGTATTGTAGAATT--CCGTTACTAGCATATGATCCAT 77361 || | | ||| | |||| ||| ||| || || || |||| ||||| | Sbjct 429614 ACAGGCTTATAGTTCCATAAATCGAATT--AGAGTTGACCCTTTGAAGCAGGAGATCCCT 429557 Query 77362 TATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGT 77421 | |||||||||||| |||||| || ||| | ||| | ||||| | || || Sbjct 429556 TGAATGTTTCATAAGCTCCTTCCTTTATAGCAATTTCCATAGAAGCTTCACAAGCACCAA 429497 Query 77422 AATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGAT 77481 |||| ||||||||||| || | | ||| | | | ||||| ||| || || || Sbjct 429496 AATAGATTGTTTCGAAGATTCTTTCATTAATAATCTAAGCTTCGTCACTTTCGAA-AGAA 429438 Query 77482 AATGT-AAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 | | | | |||||||||||| || | || | ||| ||||||||||||||||||||| Sbjct 429437 ATTCTCATCTTAATAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCTATGT 429378 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATT 77581 || |||| || ||||||||||||||| ||| |||||||| Sbjct 429377 CTAATATTTGACTTTTTAGCTTCTGGAACAGGGTAATAATT 429337 >seq28 Length=897071 Score = 147 bits (162), Expect = 3e-30 Identities = 490/752 (65%), Gaps = 28/752 (4%) Strand=Plus/Minus Query 48014 ATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGAC 48073 ||||||||| ||||||| || || ||||| || | | || || | ||| ||| ||| Sbjct 62861 ATTCATTCCAATAAGTTCGACGGGGAGAGCTTCTGAGATGAATTCCTTTTCAATATCGAC 62802 Query 48074 AGCATCCACTATTATCGATGTTACCG-TTTCCTCACTTGGTGGATACAACAAATGTTTAA 48132 ||| || | || || |||| | |||| ||| |||||| | | | ||||| Sbjct 62801 AGCTTCAATGATAAT----GTTATAGATTTCTTCA-TTGGTGAGTTTATTA----TTTAA 62751 Query 48133 --------ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTC 48184 | | |||||| || |||||| || || |||||||||||| ||| | ||| Sbjct 62750 CATGGAGTATAATAAACAAGCGAAATCAGTGTGGAGGCCTTCATCTCTAGAAATGAGTTC 62691 Query 48185 GTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAA 48244 || || || || | ||||||||||| ||| || || ||||| || || || ||| Sbjct 62690 ATTGGAGAAGGTCAAACCGGGCATTAAAGAACGCTTCTTAAGCCAGAAGATGGCACAGAA 62631 Query 48245 AGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT 48304 | ||| |||||||| ||||| | ||| ||||| || | ||||| | | | Sbjct 62630 ACTACCACTGAAGAATATACCTTCGATGGCAGCAAAAGCAATGAGTCTGGAAGCAAAGTT 62571 Query 48305 GGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTA-CACAAGG-CATT 48362 | | ||| | |||||| | ||||| | ||||||||| || | ||| || ||| Sbjct 62570 ATCGTTGTTATTGATCCACTTAAGAGCCCATTGAGCCTTCTTGTTAATGACAGGGACAT- 62512 Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATT 48422 ||| || || || || || | |||||| | ||| |||| || || || || Sbjct 62511 -TTTGAGAGGCCTTGAAAAGGAATTCCTTTTCAGTTTCATCCTTAATATAGGTGTCAATC 62453 Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482 ||||| || |||| ||||| |||||||| || || || | || || || || Sbjct 62452 AAAAGGGAGTAAGTTTCAGAGTGGATATTTTCCATGGCAATTTAGAAACCATAGAAGGCA 62393 Query 48483 CTCGCTTCTGTGATCTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTAT 48541 | ||||| | ||| || | || | ||| ||| || || | || ||| || || Sbjct 62392 CGAGCTTCGGGGATTTGGA-CTTCACACATGAATTACTCGGCGAGGTTTTCAAGGACGAT 62334 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGT 48601 |||||| |||||| || || || | |||| |||||| || | ||||||| ||| Sbjct 62333 ACCATCAGAAGCAGCGAAGAAAGCAAGGACATATTTAATGAAGTGACGTTCGTTGTCAGT 62274 Query 48602 CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA 48661 || | ||| || || | ||||| ||| ||| | ||| ||||| ||||| || || Sbjct 62273 AAGACGTTCCCAATCCTTTAAATCTTGATATAAATCAATTTCGTCAGCAGTCCAGAAAGA 62214 Query 48662 TGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || | |||| || ||||| | ||| | | |||||| || ||||| | ||||| Sbjct 62213 AGCGAGTTCTTTCTTGTACATTTCCCAGACCTTGTTGTATTTAATGGGGAAGAGGACAAA 62154 Query 48722 TCTATTTGGATTTT--TTGCAAGGATAGGTTC 48751 | || || |||| ||| ||||||||||| Sbjct 62153 ACGGTTAGGGTTTTCCTTG--AGGATAGGTTC 62124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665977908000