Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 257 2e-63 >seq2 Length=2195051 Score = 257 bits (284), Expect = 2e-63 Identities = 497/730 (68%), Gaps = 4/730 (1%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 ||||||||| ||||| | |||||||||||| |||||||||||| | ||||| | Sbjct 428872 TTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGGAAGTCCAGGGC 428813 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 ||||||| |||||||| | | ||| | ||||| | | || | ||||| || |||| Sbjct 428812 ATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGAT 428753 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCT 76676 | || ||||| || |||| |||| ||||| | ||| |||||| || || ||||| Sbjct 428752 CGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCT 428693 Query 76677 TTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAA 76736 | || | | ||||| || | || |||||||||||| ||||||| || | || | Sbjct 428692 TCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGG 428633 Query 76737 CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCA 76796 |||| || || ||| || ||||| | |||||| ||||| | ||| | || | | Sbjct 428632 AACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATTGAAGACACGGA 428573 Query 76797 ACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCAC 76856 ||| |||| || || ||||| |||||||||| || ||||||||| | | || | Sbjct 428572 GCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACTATCTCTAGCTC 428513 Query 76857 GAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT 76916 |||||| || || || || || || ||||| | |||||||||| |||||| | | Sbjct 428512 TGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAAAGCACATTGCT 428453 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG 76976 | | |||||||| || || ||||| ||| | ||| | ||| | ||||| ||| Sbjct 428452 TAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAGTAAGAAACAACTAC 428393 Query 76977 ACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATT 77036 ||||| | | ||| |||| ||| || | ||||||| |||||||||||||| | Sbjct 428392 TCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATGAGTGAACCACT 428333 Query 77037 TTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTA 77096 ||||| | || ||| || || | | ||| | ||| | | |||||| || | Sbjct 428332 TTTCACTCATTAAATTATAAGTACGGAAGGCACTTTCCAAATCTCTCTTATGAATACCAA 428273 Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156 || || | ||| ||||| | ||||||| ||| || | ||| ||| | ||| || | Sbjct 428272 TAGAAACTCTCATTAACATTTATTGAGGTCTTTCAGCAATTTTACCATTCAATTTTAA-A 428214 Query 77157 AGTATGATT--TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 77214 || || | | ||| | ||| || |||||||| | | || | | | ||||| || || Sbjct 428213 AG-ATAACTACGTTCGAGAGTCTTGAAACCAAAGAAATCATAAGTATAATCTCTATCATA 428155 Query 77215 AATAATAACC 77224 | |||||||| Sbjct 428154 ATTAATAACC 428145 Score = 168 bits (186), Expect = 1e-36 Identities = 471/716 (66%), Gaps = 20/716 (3%) Strand=Plus/Minus Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 ||||| | ||||||||||| | || | | || || || |||| | | || | Sbjct 430034 GGATCAGAGATATGAATATTAAGAGATTAAGATTAGTCAATAAAAGGACTACGGCCAACA 429975 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 || | || ||||| | |||||||| | |||||||| ||||| | | || || ||| Sbjct 429974 GCGAGATTAATAATAGCCTTTTGAGATACTTCCCAAACTGTTTTATAGAGTTACTTAATA 429915 Query 75605 TCATCTGGAAGATTTG-TATT--TTGAATGGATCCGCCATCAGATATAATTGTATTCTTG 75661 ||||| |||| || | |||| ||||| || || | || | | | ||| || Sbjct 429914 TCATCGGGAATATCAGCTATTGTTTGAACAGAGCCATTGTAAGCAAGGAGTTAATTTTTA 429855 Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721 || | |||||| | ||||| || ||||| || || ||||||||||| | | Sbjct 429854 ATTGAAGGATTCCAAAGATTTCTTTCAATTAAATCTTAAACAAGATGAGGATTGATACAA 429795 Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||| |||| | ||||| || || |||| ||| ||||| ||||| | ||| Sbjct 429794 ACAAATTCACCAGCAAGGACTCTACGGGTATAAAGATTGGAAGTATAGGGTTCAAATGAT 429735 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || |||||||| | || || |||||||| |||||||| || | ||| | | | Sbjct 429734 TCGCAATTACCCAAAATCTAAGAGGTAGAAGCAGTAGGCATAGGAGCAATCAAAAGAGAA 429675 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC-------CCAAAG 75894 || | | ||||||| ||||| | || | | | |||||| ||| | Sbjct 429674 TTACGCATACCATGTTCAACAATTTTTTTCTTCAAACCATCCCAATCGTATCCACCATAA 429615 Query 75895 ATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATT--CCGTTGCTAGCATATGAT 75952 | | | || | ||| | |||| ||| ||| || || || |||| ||| Sbjct 429614 ACAGGCTTATAG----TTCCATAAATCGAATT--AGAGTTGACCCTTTGAAGCAGGAGAT 429561 Query 75953 CCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCA 76012 || || ||||||| |||| || |||||| ||| | ||| | || || | ||| Sbjct 429560 CCCTTGAATGTTTCATAAGCTCCTTCCTTTATAGCAATTTCCATAGAAGCTTCACAAGCA 429501 Query 76013 CCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAA 76072 || |||| ||||||||||| || | | ||||| | | ||||| ||| || ||| Sbjct 429500 CCAAAATAGATTGTTTCGAAGATTCTTTCATTAATAATCTAAGCTTCGTCACTTTCGAAA 429441 Query 76073 GGATAATGTAAAAG-AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCT 76131 | | | | | | |||||| ||||| || || || | ||| ||||||||||||||||| Sbjct 429440 GAA-ATTCTCATCTTAATAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCT 429382 Query 76132 ATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAA 76187 |||||| |||| || ||| ||||||||||| |||||||||||| ||| |||| Sbjct 429381 ATGTCTAATATTTGACTTTTTAGCTTCTGGAACAGGGTAATAATTTTCATCAATAA 429326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931503704000