Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq81 96.9 8e-15 seq77 89.7 1e-12 >seq81 Length=427612 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||||| ||||| || ||||||||||||||||||| | ||||| || Sbjct 245194 TCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 245253 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||| || || || ||||||||||| || | | || | | ||| |||||||| Sbjct 245254 GTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGGATACCTTCCTT 245313 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| || || |||||| | || | |||| || || || || | ||||| Sbjct 245314 ATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACGTCTAAGGTAAT 245373 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 || || || || | |||||| ||||| | | ||||| Sbjct 245374 GGTCTTACCAGTTAAAGTCTTAACGAAAATTTACATTT 245411 >seq77 Length=437778 Score = 89.7 bits (98), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||||||||| || ||||| || ||||| |||| | |||||| || Sbjct 1478 TCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGAAAGAGTTCTTCC 1537 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || ||||| ||||| || | | || | | || |||||||| Sbjct 1538 ATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGGAGGAATACCTTCCTT 1597 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| ||| || ||||| | || | ||| || || || || |||||||| Sbjct 1598 ATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACATCGAGAGTAAT 1657 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 || || || || | |||||| | ||| | || ||| ||| |||| ||| Sbjct 1658 GGTCTTACCAGTCAAAGTCTTAATGAAAATCTACATACCACCTCTTAATCT 1708 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||||||||| |||||||| || ||||| |||| | |||||| |||||||| || | Sbjct 1719 TGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAAAGAGTTCTTCCATCTTCGAGTTGT 1778 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || ||||| || | | || | | || |||||||| |||| ||| || Sbjct 1779 TTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGAATACCTTCCTTATCTTAAATCTTA 1838 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | ||| || || || || ||||| || || || || || Sbjct 1839 GCCTTGACATTTTCAATAGAGTCAGAGGCTTCAACATCGAGAGTGATGGTCTTACCAGTC 1898 Query 152082 AGAGTCTTCACGAA 152095 | |||||| ||||| Sbjct 1899 AAAGTCTTAACGAA 1912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815995418075