Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq77 149 1e-30 seq81 129 1e-24 seq24 107 4e-18 seq180 91.5 3e-13 seq127 91.5 3e-13 seq75 91.5 3e-13 seq63 91.5 3e-13 seq41 91.5 3e-13 seq40 91.5 3e-13 seq34 91.5 3e-13 seq26 91.5 3e-13 seq25 91.5 3e-13 seq23 91.5 3e-13 seq21 91.5 3e-13 seq20 91.5 3e-13 seq12 91.5 3e-13 seq10 91.5 3e-13 seq3 91.5 3e-13 >seq77 Length=437778 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| || |||||||| | ||| || | ||||| || |||||||| || ||||| Sbjct 1730 TTCTTTTTGAATATTGTAGTCGGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAA 1789 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| |||||||| ||||| |||| ||||| || || || | Sbjct 1790 AATAAGTCTTTATTAATCAGGAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACATT 1849 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||| ||| || ||||| || ||||||||||| |||||||| |||||||||||||| Sbjct 1850 TTCAATAGAGTCAGAGGCTTCAACATCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAAC 1909 Query 283088 GAATATCTGCAT 283099 ||| || | ||| Sbjct 1910 GAAAATTTACAT 1921 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| || |||||||| | ||| || | ||||| || |||| ||| || || || Sbjct 1502 TTCCTTTTGAATATTGTAGTCGGAAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAA 1561 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| |||||||| ||||| |||| ||||| || || ||| | Sbjct 1562 AATAAGTCTTTATTAATCAGGAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTT 1621 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||| ||| || ||||| || |||||||| || |||||||| ||||||||||||| Sbjct 1622 TTCAATAGAGTCAGAGGCTTCAACATCGAGAGTAATGGTCTTACCAGTCAAAGTCTTAAT 1681 Query 283088 GAATATCTGCAT 283099 ||| |||| ||| Sbjct 1682 GAAAATCTACAT 1693 >seq81 Length=427612 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| || | ||| || | ||| || || ||||| || || || || Sbjct 245218 TTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAA 245277 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | || || || || ||||| ||||| ||||||||||| || || || | Sbjct 245278 GATAAGTCTTTATTAATCGGGGGGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATT 245337 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || ||||| || || | || || |||||||| || ||||||||||| Sbjct 245338 TTCAATAGTGTCAGAGGCTTCAACGTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAAC 245397 Query 283088 GAATATCTGCATTT 283101 ||| || | ||||| Sbjct 245398 GAAAATTTACATTT 245411 >seq24 Length=964434 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || || || ||||| || || || ||||| | | ||||| || || ||||| ||| Sbjct 626673 CCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCC 626614 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| || || ||| | || ||||| || |||||||| || || | ||| Sbjct 626613 TTGTCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTA 626554 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 || || ||||| || | || |||||||| || |||||||| || Sbjct 626553 ATGGTTTTACCAGTGAGGGTTTTAACGAAAATTTGCATTTTGAT 626510 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 127255 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 127309 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 189519 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 189573 >seq180 Length=97215 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 38903 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 38957 >seq127 Length=273313 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 160439 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 160493 >seq75 Length=443202 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 204734 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 204788 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 205694 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 205748 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 207705 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 207759 >seq63 Length=550775 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 307667 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 307613 >seq41 Length=642683 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 467567 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 467513 >seq40 Length=673313 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 424750 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 424804 >seq34 Length=755433 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 22542 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 22596 >seq26 Length=900657 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 628701 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 628755 >seq25 Length=912730 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 779019 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 778965 >seq23 Length=973195 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 96881 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 96827 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 477366 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 477312 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 486746 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 486692 Score = 91.5 bits (100), Expect = 3e-13 Identities = 63/71 (89%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 168742 TATATGA----CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGG 168797 ||||||| ||| |||||||||||||||||| |||||||||||||||||||||| || Sbjct 497045 TATATGAAATCCGAGATAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGG 496986 Query 168798 GTTCAATTCCC 168808 ||||||||||| Sbjct 496985 GTTCAATTCCC 496975 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 519683 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 519629 >seq21 Length=988075 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 897958 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 898012 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 906771 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 906825 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 914756 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 914810 >seq20 Length=988267 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 151883 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 151937 >seq12 Length=1118408 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1027224 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 1027170 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1031982 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 1031928 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1032388 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 1032334 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1041028 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 1040974 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1041289 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 1041235 >seq10 Length=1235558 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1183441 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 1183387 >seq3 Length=1815025 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1049809 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCCGGGTTCAATTCCC 1049755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734841312550