Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq28 102 8e-17 >seq28 Length=897071 Score = 102 bits (112), Expect = 8e-17 Identities = 344/530 (65%), Gaps = 7/530 (1%) Strand=Plus/Minus Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 |||||||| || |||||| || ||||||||||| ||| ||| | |||||| || || Sbjct 62740 AATAAACAAGCGAAATCAGTGTGGAGGCCTTCATCTCTAGAAATGAGTTCATTGGAGAAG 62681 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA 23622 || || || |||||||| || || |||| ||| || || ||| || || Sbjct 62680 GTCAAACCGGGCATTAAAGAACGCTTCTTAAGCCAGAAGATGGCACAGAAACTACCACTG 62621 Query 23623 AAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAA 23682 ||||| ||||| || | || ||||| || | || | | | |||| | | || | | Sbjct 62620 AAGAATATACCTTCGATGGCAGCAAAAGCAATGAGTCTGGAAGCAAAGTTATCGTTGTTA 62561 Query 23683 TCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTAC-ACACTCAATTGTTTCAAT 23741 | ||||| || | ||| | ||||||| || | ||| | | ||| | Sbjct 62560 TTG---ATCCACTTAAGAGCCCATTGAGCCTTCTTGTTAATGACAGGGACAT-TTTGAGA 62505 Query 23742 TGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 || || || || || ||||| | ||| | ||||| || ||||| | | Sbjct 62504 GGCCTTGAAAAGGAATTCCTTTTCAGTTTCATCCTTAATATAGGTGTCAATCAAAAGGGA 62445 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || ||||||| || |||||||| || ||||| | || ||||| || | |||||| Sbjct 62444 GTAAGTTTCAGAGTGGATATTTTCCATGGCAATTTAGAAACCATAGAAGGCACGAGCTTC 62385 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 | | ||| || ||| | ||| | || | ||||| || ||||||||| Sbjct 62384 GGGGATTTGGACTTCACACATGAATTACTCGGCGAGGTTTTCAAGGACGATACCATCAGA 62325 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTT 23980 |||||| ||||||||||| |||||||| || || || | ||| | || ||| || Sbjct 62324 AGCAGCGAAGAAAGCAAGGACATATTTAATGAAGTGACGTTCGT-TGTCAGTAAGACGTT 62266 Query 23981 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 |||||| || | ||||| ||||||||| ||| ||| | ||||| ||| Sbjct 62265 CCCAATCCTTTAAATCTTGATATAAATCAATTTCGTCAGCAGTCCAGAAA 62216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485881455000