Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq77 136 1e-26 seq81 132 1e-25 seq105 120 7e-22 seq24 105 2e-17 seq121 91.5 4e-13 seq2 91.5 4e-13 seq41 87.8 4e-12 >seq77 Length=437778 Score = 136 bits (150), Expect = 1e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| || ||| | || || || || ||||| ||||| || ||| ||| ||| Sbjct 1917 AAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCTGACT 1858 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || ||||| |||||| | || || ||||| || ||||| || | || Sbjct 1857 CTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAATAAA 1798 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||| || || || ||||| |||||||||||||| |||||| |||| || || | | Sbjct 1797 GACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTACAATATTC 1738 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| || || || | || || ||| | ||| Sbjct 1737 AAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGA 1700 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 |||||| | || ||| | || || || || || || ||||| || ||| ||| ||| | Sbjct 1687 ATTTTCATTAAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCTGACTCT 1628 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || |||||||| |||||| | || || ||||| || ||||| || | || || Sbjct 1627 ATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAATAAAGA 1568 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 ||||| ||||| || ||| | || ||||||||||| |||||| |||| || || | ||| Sbjct 1567 CTTATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAATATTCAA 1508 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || | ||| | ||| | ||| Sbjct 1507 AAGGAATCTACTCTTCACTTAGTTCTTAGATTGAGA 1472 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| || || ||||| | || || ||||| ||||| || || || ||| ||| ||| Sbjct 1461 AAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCTGACT 1402 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || |||||||| |||||| | || || ||||| || ||||| || | || Sbjct 1401 CTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAATAAA 1342 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 |||| || ||||| || ||| | || ||||||||||| |||||| | || || || | | Sbjct 1341 GACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAATATTC 1282 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || || | || |||||| | ||| Sbjct 1281 AAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGA 1244 >seq81 Length=427612 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| || ||| | || || || || || ||| | || || ||| ||| |||| Sbjct 245405 AAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGACGTTGAAGCCTCTGACA 245346 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || ||||| ||||| || || || ||||| ||||| || || | || Sbjct 245345 CTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCCGATTAATAAA 245286 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||||||||| || || || || ||||| || || || ||| ||||||| ||| ||| Sbjct 245285 GACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCCTTTCCGATTACAACATCC 245226 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || || | || |||||| | ||| Sbjct 245225 AAAAGGAATCTACCCTTCACTTAGTCTTGAGATTAAGA 245188 >seq105 Length=326417 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||| || |||||||| |||||||| || ||||| || || | | | | || ||| Sbjct 7787 ATTTTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGATATTAATTCCGCTGATACC 7728 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || || || ||| | ||||| || || ||||| |||||||| || | || || Sbjct 7727 ATTGAAAATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATTAATAAAGA 7668 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 ||||| || || ||||| || || ||||||||||| ||| | | || ||||| || || Sbjct 7667 CTTATATTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAATATCTAA 7608 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || || | || || ||||| ||| Sbjct 7607 AAAGAATCTACCCTTCACTTAGTGTTAAGACTAAGA 7572 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 |||| || |||||||| |||||||| || ||||| || || | | | | || || | Sbjct 8245 TTTTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGACATTAATTCCGCTGATACTA 8186 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 | || || || ||| | ||||| || || ||||| |||||||| || | || ||| Sbjct 8185 TTGAAAATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATTAATAAAGAC 8126 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 |||| || || ||||| || || ||||||||||| ||| | | |||||||| || ||| Sbjct 8125 TTATTTTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGATTATAATATCTAAA 8066 Query 178108 AAGAATCAACACTGCATCTTGTTTTG 178133 |||||||||| || ||| | || ||| Sbjct 8065 AAGAATCAACTCTCCATTTAGTATTG 8040 Score = 91.5 bits (100), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| || || ||||| | || ||||| || || || || || || | |||||| Sbjct 8476 AAATATTTGTTAAAACATTAACTGGAAAGACTATTACTCTAGATGTCTAGTCTTCAGACT 8417 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || | ||| ||||| | || || ||||| |||||||| || | || Sbjct 8416 CTATAGAAAATATTAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAATAAA 8357 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||| || || || || | ||||| |||||||| ||| | | || |||||| | Sbjct 8356 GACTTATTTTTGCTGGTAAGTAACTCGATGATGGAAGAACTATCTCTGACTATAACATTT 8297 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| ||| | ||| | ||| | ||| Sbjct 8296 CTAAAGAATCAACACTCCATTTAGTTCTTAGATTGAGA 8259 >seq24 Length=964434 Score = 105 bits (116), Expect = 2e-17 Identities = 122/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| ||||| ||||| || ||||| || || | || || ||| Sbjct 626513 AAAATGC---AAATTTTCGTTAAAACCCTCACTGGTAAAACCATTACTTTGGACGTTGAA 626569 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || |||||||| ||||| || ||||| ||||| ||||| || Sbjct 626570 GCTTCCGATACTATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCC 626629 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | ||| ||||||||||||| || || || || ||||| || Sbjct 626630 GATTAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGG 626673 >seq121 Length=281021 Score = 91.5 bits (100), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| || || ||||| | || || || || | || || || || | |||||| Sbjct 224862 AAATATTTGTTAAAACATTAACTGGTAAGACTGTTACTCTAGATGTTTAGTCATCAGACT 224803 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || ||||| ||||| | || || ||||| |||||||| || || || Sbjct 224802 CTATAGAAAATATCAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAGTAAA 224743 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 |||| || || || || || || || ||||||||||| ||| | | || ||||| || Sbjct 224742 GACTCATTTTTGCTGGTAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAATATCT 224683 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||| || ||| | ||| | ||| | ||| Sbjct 224682 CAAAAGAATCAACCCTTCATTTAGTTCTTAGATTGAGA 224645 >seq2 Length=2195051 Score = 91.5 bits (100), Expect = 4e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 214248 TCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCATC 214307 ||| || || ||||| || || |||||||| |||||||| ||| | |||||| Sbjct 428883 TCTACCTTCATTTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGG 428824 Query 214308 AAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTTT 214367 ||| || || || || || || | |||| |||||| ||||| | | ||||||| || Sbjct 428823 AAGTCCAGGGCATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTT 428764 Query 214368 CATGAAAAGGTCGGAAGTCCAGATTGCATAAAAAATCTCTCTGGCTCT 214415 ||||||||| |||| | |||| | |||| | || | ||||| ||||| Sbjct 428763 CATGAAAAGATCGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCT 428716 >seq41 Length=642683 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 178020 GAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079 ||||| || || || || | ||| ||||||||||||| || || || || |||||||| Sbjct 166112 GAAGGTATTCCCCCTGATTAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGC 166171 Query 178080 AGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || |||||| | || ||||| | ||||| |||||||| || || | ||||| ||| | Sbjct 166172 AGAACTCTTTCTGACTATAATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTA 166231 Query 178140 AGA 178142 ||| Sbjct 166232 AGA 166234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726187588050