Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 9e-14 seq4 84.2 5e-11 >seq2 Length=1844256 Score = 93.3 bits (102), Expect = 9e-14 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1829698 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAGCCCC 1829753 >seq4 Length=637648 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| Sbjct 470932 TAGCTCAGTCGGAAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 470877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823878019670