Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 250 3e-61 >seq5 Length=831028 Score = 250 bits (276), Expect = 3e-61 Identities = 1203/1879 (64%), Gaps = 79/1879 (4%) Strand=Plus/Plus Query 52801 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 52860 ||| | |||||||| |||| | | | || |||| || |||||||| |||| || || Sbjct 46071 GTCGATTGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGT 46130 Query 52861 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG--GAATAACTCGGA 52918 ||| || || ||||||| ||||| ||||||||||| |||||| |||| | || Sbjct 46131 TTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAAT--GTTGGT 46188 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 | | | || | ||||| | || || ||||| || ||| ||| || || |||||| Sbjct 46189 TGTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCC 46248 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038 || | |||||| |||||||| ||||||||||| ||||| || | | ||| || | | Sbjct 46249 ATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGT 46308 Query 53039 TCTGGAAGGT-TTGTAT---TCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 ||| | | || || ||| || ||| || | | | |||| | | | ||| || Sbjct 46309 GGTGGGATTTCTTCAATATGTCTCAA-AGAGCCGTTGTATGCAATAAGCTTTTGCTTCAT 46367 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154 || ||||| | | ||| || | | || | ||| |||||||| || Sbjct 46368 AGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAACAAA 46427 Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAA---ATATTACTGGTATACGGTTCCACAGA 53211 ||||| || |||||| || ||||| || ||||| ||||| || || | ||| Sbjct 46428 GAATTCACCGCTCAATAC---ACGTCTGTAATAGATGTTACTAGTATATGGCTCGAAAGA 46484 Query 53212 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 53271 ||||||||||||||||| |||| || || ||||| |||||||| |||| |||||| Sbjct 46485 TTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGA 46544 Query 53272 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT---- 53327 ||||| | ||| | | || | ||| | | || || | ||||| | |||||| | Sbjct 46545 GTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATCCCAGTCCCAAAGCTTGTT 46604 Query 53328 -CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCT 53386 | || ||| || || | || ||| | | || ||| ||| Sbjct 46605 ATCAACAGTAGCACCCCAAAGATCGAAC--TGCAAAAGACCTTGAGAAGCAGGCGAACCT 46662 Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTC--TAATGCAC 53444 ||||| || || | || | ||| || || | | | | | ||| | ||| Sbjct 46663 GGATATGAGTCATAATGACCATACTTTTCGGCCA---AAGAGATAGACTCATCCAGACAC 46719 Query 53445 -CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAA 53501 | |||||||| ||||| || || ||| || || || ||||| ||| |||| Sbjct 46720 GCATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAG--ATTCAA 46777 Query 53502 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 53561 ||||||| || | || |||| || ||||| |||||||| |||| ||| ||||| | Sbjct 46778 ATGGATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCC 46837 Query 53562 TATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 | || | ||| || || | |||||| | || || || || |||| || ||| Sbjct 46838 TGTGACGGAAATTTGA-ATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATT 46896 Query 53621 TTATTGAGGTT-TCTGACAATTAC-TTTGACCACATCCTTCAGTTTGAGAAAATCAAA-- 53676 | || | || | || ||| || ||| | | | || || |||||||| Sbjct 46897 TGGTTCAAATTGTATG-TAATGACACGTGA-GATCTTGTAAAGCTTCTTGAAATCAAAAG 46954 Query 53677 --TTGTCCATC-TATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTA 53732 || ||| | |||| |||||||| || || || || |||| ||||| || || | Sbjct 46955 TCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAA 47014 Query 53733 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792 | || || ||| | ||| |||| || ||| ||| | || | | || ||||| | Sbjct 47015 CTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGGTAC 47074 Query 53793 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTAC 53852 | | ||| | ||| ||| ||| ||| || |||||||| ||||| || | ||||||| Sbjct 47075 CCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCGTAC 47134 Query 53853 CAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT 53912 |||||||||| | || | | ||| | || | | || | | ||| | | | Sbjct 47135 CAGTTTCAATTT--GACTTTGTAA--GATTGCAA----ACCATAACTTTTGTGCGGGGAT 47186 Query 53913 TGTATCTC--------TTTTCTCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCT 53962 || | | || ||| || | ||||| | | | ||||| || || Sbjct 47187 GGTCTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCC--TCAAATTCATCA 47244 Query 53963 CCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 54022 ||||| || | | ||| || || || || || ||||| | | ||| | | | | | Sbjct 47245 CCCCAGACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTA 47304 Query 54023 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGT 54081 ||| || ||||||||||| | |||||| ||||| || || ||| || |||||||| | Sbjct 47305 GCCTCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGC-ATAGAAGAGATCTCTTGC 47363 Query 54082 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 54141 ||| ||||| || || || ||||| | | | | ||||| | ||| Sbjct 47364 TCTCAAATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATG 47423 Query 54142 CCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT----CCTCCCTGATCTA 54197 ||| || ||||| ||||||| || | | | || || ||| || |||||||| | Sbjct 47424 CCATGGCTCCAAATATATGG-CAAA---CGAACCCCTTCTTTTACCACCCCCCTGATCAA 47479 Query 54198 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCAT 54257 || | ||||| | ||| | | | ||||||||||| ||||||||| || |||| Sbjct 47480 CATACTTGGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGTCCAT 47539 Query 54258 TGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCC 54316 | || ||| || ||||| ||||| ||||| || || ||||| || ||||| || Sbjct 47540 TTGTACCCCGA-ATATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCA 47598 Query 54317 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 54376 || || ||| ||| || || || | | | |||| | || || | | | | Sbjct 47599 CCAGCTGATTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAA 47658 Query 54377 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 54436 ||||| ||| | | | ||||||| ||||||||| | ||| | ||||| |||||| Sbjct 47659 TCATCTTGCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTA 47718 Query 54437 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATA 54496 |||| || |||| |||||| ||||| | |||| | || | ||| || || | Sbjct 47719 AATAGCGTTGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAACT 47778 Query 54497 GCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555 | || | ||| ||| | || ||||| | | |||||||||||||||||| ||||| Sbjct 47779 GTACGTTCGACATCACCACAG-TGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGG 47837 Query 54556 TCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACC 54615 | ||| |||||||||||||| | || ||| || || |||||| |||||||| || Sbjct 47838 GCGTTCCACGATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCC 47897 Query 54616 AAAATAGTTGTA-TGAAAA 54633 ||| || | ||| |||||| Sbjct 47898 AAAGTAATCGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721533206320