Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=1844256 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||| ||| || |||| || | |||| ||||||||||||||| ||||| | Sbjct 534842 CCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAG 534783 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||||||||| |||||||| || |||| | ||||| ||||| || Sbjct 534782 AGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGG 534723 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | | || || | |||||| Sbjct 534722 ATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACC 534663 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||||||||| || | || || ||||| |||||||| ||| Sbjct 534662 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATTG 534612 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||| ||| || |||| || | ||| |||||||||||||||||| |||| Sbjct 1772205 CCACCACGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAG 1772146 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||||||||| || || || ||| |||| | ||||||||||| || Sbjct 1772145 AGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGA 1772086 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| ||||| || || | | | || || | |||||| Sbjct 1772085 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACC 1772026 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| ||||||||||| || | || || ||||| |||||||| |||| Sbjct 1772025 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTTGA 1771974 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||| ||| || |||| || | ||| ||||||||||||||| || || | | Sbjct 535070 CCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGAC 535011 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | |||||||||| || || || ||| |||| | | |||||| ||| ||| Sbjct 535010 AATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGA 534951 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | || |||| || || | Sbjct 534950 ATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACT 534891 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||||| || | || || ||||| |||||||| Sbjct 534890 TCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259153683444