Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2 174 1e-38 >seq2 Length=1844256 Score = 174 bits (192), Expect = 1e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| || | |||||||| || ||||||||||| |||||||||||||| Sbjct 534842 CCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAG 534783 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| |||| ||||||||||| |||||||| ||||||| ||||||||| ||||| Sbjct 534782 AGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGG 534723 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| ||| ||| || | | | |||| | ||| ||| Sbjct 534722 ATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACC 534663 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || | ||| || |||||||| || |||||||| ||||| |||||||| ||| Sbjct 534662 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATTG 534612 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| || | |||||||| || || |||||||| ||||||||||| || | Sbjct 535070 CCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGAC 535011 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | || |||| |||||||| || || || || ||||| ||||| || || || || Sbjct 535010 AATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGA 534951 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| ||| ||| ||| || | | | |||| | | || || Sbjct 534950 ATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACT 534891 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| |||||||| || |||||||| ||||| |||||||| Sbjct 534890 TCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075156665189