Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 >seq2 Length=1844256 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| |||||| || || ||||||||||||||||| | | || || Sbjct 534830 CTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCG 534771 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || |||| ||||||||| || | || | || ||||| || || | || ||||| Sbjct 534770 TCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTG 534711 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | | |||||| | ||| ||||| | ||||||| |||| ||||||| Sbjct 534710 TCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATG 534651 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| || | || ||||||||||||||||| || Sbjct 534650 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATT 534613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| |||||| || || |||||||||||||| || | || ||| | Sbjct 535058 CTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCG 534999 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || |||| ||| || || ||| | || | | || |||||| ||| | ||| ||||| Sbjct 534998 TCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTG 534939 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | | |||||| | ||| ||||||| || || ||||| || ||| Sbjct 534938 TCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATG 534879 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || | || ||||||||||||||||| Sbjct 534878 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| |||||| || || ||||||||||| || || | | || || Sbjct 1772193 CTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCG 1772134 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || |||| ||| || || ||| | || | || || || || || | ||| || || Sbjct 1772133 TCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTG 1772074 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | |||||| | | ||| ||||| | ||||||| |||| ||||||| Sbjct 1772073 TCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATG 1772014 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| || | || ||||||||||||||||| || Sbjct 1772013 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTT 1771976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343958390705