Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 134 1e-26 seq2 107 2e-18 >seq5 Length=831028 Score = 134 bits (148), Expect = 1e-26 Identities = 355/536 (66%), Gaps = 16/536 (3%) Strand=Plus/Plus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 ||| | ||| || | |||||| | | ||| |||| ||||| |||||||||| || || Sbjct 46071 GTCGATTGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGT 46130 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 || || ||| | ||||| | ||||| || || |||| ||| | | | || Sbjct 46131 TTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAATGTTGGTTG 46190 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 |||||||| | ||||| ||||| |||||| ||||| ||||| ||| || ||||| Sbjct 46191 TTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCCAT 46250 Query 22288 ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAA 22347 || ||| | ||| | |||||||| || || ||||||| || | | || | | Sbjct 46251 ATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGTGG 46310 Query 22348 CGGTATCGATTCGATCC-TCTGGACGGACCCGTTATTGTGTATG--ATCAAATTTT---T 22401 || || ||| || ||| | | | ||||| ||||| || | |||| | Sbjct 46311 TGGGATTTCTTCAATATGTCTCAAAG-AGCCGTT-----GTATGCAATAAGCTTTTGCTT 46364 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || || |||||||| | || | || ||| || |||| || ||| | || || || Sbjct 46365 CATAGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAAC 46424 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || || ||| ||| || || | | || ||||| || | || |||||||| Sbjct 46425 AAAGAATTCACCGCTCAATACACGTCTGTAATAGATGTTACTAGTATATGGCTCGAAAGA 46484 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 |||||| ||||||| ||||||| ||| || || || ||||| || ||||| | || || Sbjct 46485 TTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGA 46544 Query 22582 GTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCATCGACCAGTCCCACAG 22635 ||||||||| || || ||| ||| | ||| | ||||| ||||||||| || Sbjct 46545 GTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATC--CCAGTCCCAAAG 46598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 23312 GGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTCATAAAAAGATCCGGT 23368 || ||||||||| |||| || ||||| ||||||||| ||||||| | ||| || Sbjct 47278 GGGCACATGAGAGTCCAATTT---TCATTAGCCTCAACGCGTTTCATAAACAAATCAGGG 47334 Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428 |||||||| || ||||| || || | || | || |||||| ||| ||| || | Sbjct 47335 ATCCATAGCGCATAGAAGAGATCTCTTGCTCTCAAATCCTCTGCACCGTGGTTTTTGCGC 47394 Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488 | |||||| | | || | ||||||||||| ||||| | || | |||||||| ||| Sbjct 47395 AGATCCAACATCTTAAATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAACCC 47454 Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTA 23517 ||| ||| || |||||||| || || Sbjct 47455 CTTCTTTTACCACCCCCCTGATCAACATA 47483 >seq2 Length=1844256 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| ||||||||||| || ||||| || |||||| | || || || || Sbjct 1771976 AAGATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 1772035 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | |||| ||||| | || |||||| || ||| | || || ||| Sbjct 1772036 AGCGACACAATTGAAAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGAC 1772095 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | | || || ||||| || || |||| ||| | ||| | |||||| Sbjct 1772096 CAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAGGACGGTCGTACTCTCTCGGATTAT 1772155 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || |||||||| |||| ||||| || | || |||| Sbjct 1772156 AACATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGTTGCGTGGTGGTA 1772207 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| ||||||||||| || ||||| || |||||| | || || || || Sbjct 534613 AATATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 534672 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | ||||| || ||| | | ||||||| || | || || || Sbjct 534673 AGCGACACGATTGAGAATGTCAAGGCAAAGATTCAAG-ACAAGGAGGGTATCCCTCCAGA 534731 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| ||| | | || ||||| |||||||| |||| ||| | ||| | || || Sbjct 534732 CCAACAGAGGTTGATTTTCGCCGGCAAACAACTGGAGGACGGTCGCACTCTCTCAGACTA 534791 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || |||||||| |||| ||||| || | || |||| Sbjct 534792 CAACATTCAAAAGGAGAGCACTCTTCACTTGGTTCTTAGGTTGCGTGGTGGTA 534844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||||||||| || ||||| || || || | || |||||||| Sbjct 534844 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATTACTCTTGAAGTTGAACCTAGT 534903 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || || |||||||| ||| | || || || || Sbjct 534904 GACACAATTGAGAATGTCAAGGCAAAG-ATTCAAGACAAGGAGGGCATTCCCCCGGATCA 534962 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || || ||||| || || |||| ||| || || ||||| || Sbjct 534963 GCAGCGTTTGATTTTTGCTGGTAAGCAACTGGAGGACGGACGTACATTGTCTGATTACAA 535022 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||| || |||||||| |||| ||||| || | || ||| Sbjct 535023 CATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGTTGCGCGGTGGT 535071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766349851280