Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 228 1e-54 >seq5 Length=831028 Score = 228 bits (252), Expect = 1e-54 Identities = 1189/1869 (64%), Gaps = 59/1869 (3%) Strand=Plus/Plus Query 62039 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 62098 ||| | |||||||| |||| | | | || |||| || |||||||| |||| || || Sbjct 46071 GTCGATTGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGT 46130 Query 62099 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG--GAATAACTCGGA 62156 ||| || || ||||||| ||||| |||||||| || |||||| |||| | || Sbjct 46131 TTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAATG--TTGGT 46188 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 | | | || | ||||| | || || ||||| || ||| ||| || || |||||| Sbjct 46189 TGTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCC 46248 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276 || | |||||| |||||||| ||||||||||| ||||| || | | ||| || | | Sbjct 46249 ATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGT 46308 Query 62277 TCTGGAAGGTTTG---TAT-TCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 ||| | | | ||| ||| || | | || | | | |||| | | | ||| || Sbjct 46309 GGTGGGATTTCTTCAATATGTCTCAAAG-AGCCGTTGTATGCAATAAGCTTTTGCTTCAT 46367 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 || ||||| | | ||| || | | || | ||| || ||||| || Sbjct 46368 AGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAACAAA 46427 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAA---ATATTACTGGTATACGGTTCCACCGA 62449 |||||| || |||||| | | ||||| || ||||| ||||| || || | || Sbjct 46428 GAATTCACCGCTCAATACACGTC---TGTAATAGATGTTACTAGTATATGGCTCGAAAGA 46484 Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62509 ||||||||||||||||| |||| || || ||||| |||||||| |||| |||||| Sbjct 46485 TTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGA 46544 Query 62510 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATC--- 62566 ||||| | ||| | | || | ||| | | || || ||||| | |||||| | Sbjct 46545 GTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATCCCAGTCCCAAAGCTTGTT 46604 Query 62567 --CGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCT 62624 | || ||| || | || | || ||| | | || ||| ||| Sbjct 46605 ATCAACAGTAGCACCCCAAAGATCGAAC--TGCAAAAGACCTTGAGAAGCAGGCGAACCT 46662 Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTA--ATGCAC 62682 ||||| ||||| | || | ||| || || | | | | | ||| | ||| Sbjct 46663 GGATATGAGTCATAATGACCATACTTTTCGGCCAA---AGAGATAGACTCATCCAGACAC 46719 Query 62683 -CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 | |||||||| |||||||| || ||| || || || ||||| |||||| Sbjct 46720 GCATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAGATTCAAAT 46779 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62801 ||||| || | || |||| || ||||| |||||||| |||| ||| ||||| || Sbjct 46780 GGATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCCTG 46839 Query 62802 TGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 62860 || | ||| || || | |||||| | || || || || |||| || |||| Sbjct 46840 TGACGGAAATTTGA-ATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATTTG 46898 Query 62861 ATTGAGATT-TCTGACAATTACTT-TGACCACATCCTTCAGTTTGAGAAAATCAAA---- 62914 || | ||| | || ||| || ||| | | | || || |||||||| Sbjct 46899 GTTCAAATTGTATGT-AATGACACGTGAGATCTTG-TAAAGCTTCTTGAAATCAAAAGTC 46956 Query 62915 -TCGCCCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 || || ||||| ||||||| || || | || |||| ||||| || || || Sbjct 46957 TTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAACT 47016 Query 62973 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 || || ||| | ||| |||| || ||| ||| | || | | || || || || Sbjct 47017 TCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGGTACCC 47076 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 | ||| | ||| ||| ||| ||| || |||||||| ||||| || | || |||||| Sbjct 47077 AGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCGTACCA 47136 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 63152 |||||||| ||| || || || || ||| | | | || || | || Sbjct 47137 GTTTCAATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGATGGTC---TTA 47193 Query 63153 TATCTC---CTTTCTCTTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAA 63207 | | | || ||| || | | ||| | | | || || || || ||||| | Sbjct 47194 CGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCC--TCAAATTCATCACCCCAGA 47251 Query 63208 CATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 63267 | | | ||| | || || || || ||||| | | ||| | | | | | ||| | Sbjct 47252 CTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTCAA 47311 Query 63268 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGT 63326 | ||||||||||| | |||||| ||||| || || ||| || |||||||||| ||| Sbjct 47312 CGCGTTTCATAAACAAATCAGGGATCCATAGCGC-ATAGAAGAGATCTCTTGCTCTCAAA 47370 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| || || || ||||| | | | | ||||| | |||||| || Sbjct 47371 TCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCATGGC 47430 Query 63387 TCCAAGTATATGGCCAT--AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63444 ||||| |||||||| | ||| || | ||| || |||||||| | || | | Sbjct 47431 TCCAAATATATGGCAAACGAACCCCTT--CTTTTACCACCCCCCTGATCAACATACTTGG 47488 Query 63445 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63504 |||| | ||| | | | ||||||||||| |||||| || || ||||| ||||| Sbjct 47489 CGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGTCCATTTGTACCCC 47548 Query 63505 AGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 63564 ||||| ||||| ||||| || || ||||| || |||||||| || || || Sbjct 47549 GAATATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCTGATT 47608 Query 63565 TAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA 63624 | ||| || || || | | | || | | || ||| | | |||||| || Sbjct 47609 TGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCTTGCA 47668 Query 63625 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAG 63684 | | | | ||||||| ||||||||| | ||| | ||||| |||||||||| || | Sbjct 47669 TATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGCGTTG 47728 Query 63685 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 63744 ||| |||||| ||||| | |||| | || | ||| || |||| | || | Sbjct 47729 GAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAACTGTACGTTCGA 47788 Query 63745 TATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACA 63803 ||| ||| | || ||||| | | |||||||||||||||||| ||||| | ||| || Sbjct 47789 CATCACCACAG-TGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTCCACG 47847 Query 63804 ATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63863 || |||||||| | |||||| || || |||||| |||||||| ||||| || | | Sbjct 47848 ATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTAATCG 47907 Query 63864 TA-TGAAAA 63871 || |||||| Sbjct 47908 TACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817529145520