Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 134 1e-26 >seq5 Length=831028 Score = 134 bits (148), Expect = 1e-26 Identities = 1163/1863 (62%), Gaps = 82/1863 (4%) Strand=Plus/Plus Query 36795 TGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAG 36854 |||||||||||| | || | || | || ||| | | |||||||| || ||||| || Sbjct 46077 TGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGTTTTGAG 46136 Query 36855 CCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTAT 36914 ||| | ||||||| ||||| |||||||| |||||||| | |||| || | || || Sbjct 46137 TCCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAATGTTGGTTGTTCCAT 46196 Query 36915 ATATATTGTCATTGATTGACTT----TGATCTATAAACGCACCTCTGTCGGCTGCCATTT 36970 || || ||||| |||| ||||||||||| ||||| || || ||||| | Sbjct 46197 GTAAAT----ATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCCATAT 46252 Query 36971 CTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTG 37030 ||| || ||||| || |||||||| ||||| || | || ||||| | || Sbjct 46253 CTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGTGGTG 46312 Query 37031 GTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTAT-GTCA 37086 | | ||| | |||| | ||| || || | | | || | | ||| || ||| Sbjct 46313 GGATTTCTTCAATATGTCTCAAAGAGCCGTTGTATGCAATAAGCTTTTGCTTCATAGTC- 46371 Query 37087 TTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | ||||| | | | | | | | || | | | |||||||| ||||| | Sbjct 46372 TCGTTCCAGAG--TCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAACAAAGA 46429 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || || ||||| | ||| ||| || || ||||||||||| || | || |||| Sbjct 46430 ATTCACCGCTCAATACACGTCTGTAATAGATGTTACTAGTATATGGCTCGAAAGATTCAT 46489 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 |||| | || || ||||| ||||| ||||||||||| || || | | | |||| Sbjct 46490 TATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGAGTTTC 46549 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 |||| |||||| | || ||||| || || ||| ||| ||||| | | |||| Sbjct 46550 TCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATCCCAGTCCCAAAGCT-TGTTATCA 46608 Query 37325 TCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380 | || | || | ||| | || | || ||||| | || || ||| | |||| Sbjct 46609 ACAGTAGCACCCCAAAGATCGAACTGCAAAAGACCTTGAGAAGCAGGCGAACCTGGATAT 46668 Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT-------TCTAGTGCGGC 37433 | |||||| | || || ||| || ||| |||| || || || Sbjct 46669 GAGTCATAATGACCATACTTTTCGGC-------CAAAGAGATAGACTCATCCAGACACGC 46721 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 |||||| || ||||| || || | | || | | ||||| || || |||| Sbjct 46722 ATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAGATTCAAATGG 46781 Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 ||||| ||| || || ||| |||||| ||||| ||||| || | ||| || || || || Sbjct 46782 ATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCCTGTG 46841 Query 37554 TTTCTTATTAGAT---CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTT 37610 ||| || |||| ||| ||||||| || || || |||| || |||| Sbjct 46842 ACGGAAATTTGAATACCTAGC---TTCCTTCACTGGGTAGTAGTTTCTATCAATGATTTG 46898 Query 37611 ATTTAGATTTTTAACTAGTATTTTCGTAAT-TATTCTCAA-CTTGTCGAA--CATAAATA 37666 || | ||| | | || | ||| | | || | || ||| | ||| || || | Sbjct 46899 GTTCAAATTGT-ATGTAATGACA-CGTGAGATCTTGTAAAGCTTCTTGAAATCAAAAGTC 46956 Query 37667 ----CGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACT 37722 | | ||||||||||| || || | || || | | ||||| ||||||||| Sbjct 46957 TTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAACT 47016 Query 37723 TCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCC 37782 || | | | || | |||| ||| || || | || ||| | || || ||| Sbjct 47017 TCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGGTACCC 47076 Query 37783 AAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCT 37842 | ||| |||| || |||||| || || | ||| || || || ||||||||||| || Sbjct 47077 AGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCGTACCA 47136 Query 37843 TGTTCTATTTGAGCCTCGATAATAGATTTC----CATAAACTTCTTGCTTTAACGATC-- 37896 ||| |||||| || ||| |||| | ||||| || ||| | | || Sbjct 47137 GTTTCAATTTGA--CTTTGTAA--GATTGCAAACCATAACTTTTGTGCGGGGATGGTCTT 47192 Query 37897 ---GCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCC 37953 || || || || | || | | || | | ||| |||| ||| Sbjct 47193 ACGGCCCAAACCAGCTTGTT-----CATACTTGGTGTAAAGAGCCTCAAATTCATCACCC 47247 Query 37954 CATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTT 38013 || || || | || ||| || ||| || ||||| |||| ||| | ||||| Sbjct 47248 CAGACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCC 47307 Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTA 38073 || ||||||| |||||| |||||||| | ||||| ||| || | |||| | | ||| Sbjct 47308 TCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGCATAGAAGAGATCTCTTGCTCTC 47367 Query 38074 TATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAG--AAAATCG--AATATATCAGCGTG 38129 | || || | | || | || || || | || ||| |||||||| || || Sbjct 47368 AAATCCTC--TGC--ACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATG 47423 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 |||||| || | ||| || | | | || ||||||| |||| ||||||| || ||| Sbjct 47424 CCATGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCACCCCCCTGATCAACATA 47483 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 | | || | ||| | || | ||||| || || ||||||||||| | || ||| | Sbjct 47484 CTTGGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGTCCATTTGT 47543 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGC 38309 ||| ||||| | ||| | || ||||| || || | | ||||||||||| || Sbjct 47544 ACCCCGAATATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGC 47603 Query 38310 ATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCAT 38368 || |||| | || || || || || | | |||| || || ||| | | | |||| Sbjct 47604 -TGATTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCAT 47662 Query 38369 CCTTTATTGGTAGTATAAAACAACTAGACATTTG-AGGCAATGGAGTTCCGGCGTTAAAT 38427 | | || | | |||||| ||||||||| ||| || | ||||| || |||||| Sbjct 47663 CTTGCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTG-GTTCCTGCATTAAAT 47721 Query 38428 AATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACA 38487 | || |||| || ||| | || | |||| || | | |||||||| | | | Sbjct 47722 AGCGTTGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAACTGTA 47781 Query 38488 TCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTT 38547 || | |||||| | ||| || || || || | ||||| ||| ||||| || | | Sbjct 47782 CGTTCGACATCACCACAGTGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGT 47841 Query 38548 TCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAA 38607 || | || || || || | | |||||| ||| |||||||| | |||||| Sbjct 47842 TCCACGATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAG 47901 Query 38608 TAA 38610 ||| Sbjct 47902 TAA 47904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524747290960