Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 255 8e-63 >seq5 Length=831028 Score = 255 bits (282), Expect = 8e-63 Identities = 1204/1873 (64%), Gaps = 67/1873 (4%) Strand=Plus/Plus Query 64832 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 64891 ||| | |||||||| |||| | | | || |||| || |||||||| |||| || || Sbjct 46071 GTCGATTGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGT 46130 Query 64892 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG--GAATAACTCGGA 64949 ||| || || ||||||| ||||| |||||||| || |||||| |||| | || Sbjct 46131 TTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAATG--TTGGT 46188 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 | | | || | ||||| | || || ||||| || ||| ||| || || |||||| Sbjct 46189 TGTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCC 46248 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 65069 || | |||||| |||||||| ||||||||||| ||||| || | | ||| || | | Sbjct 46249 ATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGT 46308 Query 65070 TCTGGAAGGTTTG---TAT-TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 ||| | | | ||| ||| || | | || | ||| |||| | | | ||| || Sbjct 46309 GGTGGGATTTCTTCAATATGTCTCAAAG-AGCCGTTGTATGCAATAAGCTTTTGCTTCAT 46367 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185 || ||||| | | ||| || | | || | ||| |||||||| || Sbjct 46368 AGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAACAAA 46427 Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAA---ATATTACTGGTATACGGTTCCACAGA 65242 ||||| || |||||| | | ||||| || ||||| ||||| || || | ||| Sbjct 46428 GAATTCACCGCTCAATACACGTC---TGTAATAGATGTTACTAGTATATGGCTCGAAAGA 46484 Query 65243 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 65302 ||||||||||||||||| |||| || || ||||| |||||||| |||| |||||| Sbjct 46485 TTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGA 46544 Query 65303 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC--- 65359 ||||| | ||| | | || | ||| | | || || | ||||| | |||||| | Sbjct 46545 GTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATCCCAGTCCCAAAGCTTGTT 46604 Query 65360 --CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCT 65417 | || ||| || || | || ||| | | || ||| ||| Sbjct 46605 ATCAACAGTAGCACCCCAAAGATCGAAC--TGCAAAAGACCTTGAGAAGCAGGCGAACCT 46662 Query 65418 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA--ATGCAC 65475 ||||| || || | || | ||| || || | | | | | ||| | ||| Sbjct 46663 GGATATGAGTCATAATGACCATACTTTTCGGCCAA---AGAGATAGACTCATCCAGACAC 46719 Query 65476 -CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAA 65532 | |||||||| ||||| || || ||| || || || ||||| ||| | ||| Sbjct 46720 GCATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAGATT--CAA 46777 Query 65533 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 ||||||| || | || |||| || ||||| |||||||| |||| ||| ||||| | Sbjct 46778 ATGGATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCC 46837 Query 65593 TATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 | || | ||| || || | |||||| | || || || || |||| || ||| Sbjct 46838 TGTGACGGAAATTTGA-ATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATT 46896 Query 65652 TTATTGAGATT-TCTGACAATTACTT-TGACCACATCCTTCAGTTTGAGAAAATCAAA-- 65707 | || | ||| | || ||| || ||| | | | || || |||||||| Sbjct 46897 TGGTTCAAATTGTATGT-AATGACACGTGAGATCTTG-TAAAGCTTCTTGAAATCAAAAG 46954 Query 65708 TCG-CTCATC--TATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTA 65763 || ||| || ||||| ||||||| || || | || |||| ||||| || || | Sbjct 46955 TCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAA 47014 Query 65764 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 65823 | || || ||| | ||| |||| || ||| ||| | || | | || ||||| | Sbjct 47015 CTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGGTAC 47074 Query 65824 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 65883 | | ||| | ||| ||| ||| ||| || |||||||| ||||| || | || |||| Sbjct 47075 CCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCGTAC 47134 Query 65884 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 65943 |||||||||| ||| || || || || ||| | | | || || | | Sbjct 47135 CAGTTTCAATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGATGGTC---T 47191 Query 65944 TGTATCTCTTTTCT-CTT--TCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCA 65998 | | | | ||| || || | ||||| | | | || || || || ||||| Sbjct 47192 TACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCC--TCAAATTCATCACCCCA 47249 Query 65999 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 66058 || | | ||| || || || || || ||||| | | ||| | | | | | ||| Sbjct 47250 GACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTC 47309 Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTAT 66117 || ||||||||||| | |||||| ||||| || || ||| || | |||||| | ||| Sbjct 47310 AACGCGTTTCATAAACAAATCAGGGATCCATAGCGC-ATAGAAGAGATCTCTTGCTCTCA 47368 Query 66118 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACG 66177 ||||| || || || ||||| | | | | ||||| |||||| | Sbjct 47369 AATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCATG 47428 Query 66178 GTTCCAAGTATATGGCCAT--AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 66235 | ||||| |||||||| | ||| || | ||| || |||||||| | || | Sbjct 47429 GCTCCAAATATATGGCAAACGAACCCCTT--CTTTTACCACCCCCCTGATCAACATACTT 47486 Query 66236 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA-TGTACCATTGGT-C 66293 ||||| | ||| | | | ||||||||||| ||||||||| || ||| ||||| || | Sbjct 47487 GGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGT-CCATTTGTAC 47545 Query 66294 CCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 66353 || || ||||| ||||| ||||| || || ||||| || |||||||| || || Sbjct 47546 CCCGA-ATATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCT 47604 Query 66354 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 66413 ||| ||| || || || | | | |||| | || || | | | |||||| Sbjct 47605 GATTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCT 47664 Query 66414 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 66473 ||| | | | ||||||| ||||||||| | ||| | ||||| |||||||||| Sbjct 47665 TGCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGC 47724 Query 66474 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 66533 || |||| |||||| ||||| | |||| | || | ||| || |||| | Sbjct 47725 GTTGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAACTGTACGT 47784 Query 66534 TCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 || | ||| ||| | || ||||| | | |||||||||||||||||| ||||| | ||| Sbjct 47785 TCGACATCACCACAG-TGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTC 47843 Query 66593 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 66652 |||||||||||||| | |||||| || || |||||| |||||||| ||||| || Sbjct 47844 CACGATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTA 47903 Query 66653 GTTGTA-TGAAAA 66664 | ||| |||||| Sbjct 47904 ATCGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172725955560