Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 >seq2 Length=1844256 Score = 118 bits (130), Expect = 1e-21 Identities = 166/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| ||| ||| ||||||||||||||||| | || | ||| || Sbjct 1772188 AACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTC 1772129 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || || ||||||||| | |||| | ||||| || ||||| ||||| |||||||| | Sbjct 1772128 CAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTC-CT 1772070 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | ||| | ||||||| ||||||| ||||||| ||| | |||| Sbjct 1772069 GAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCT 1772010 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATAGCTT-ATGTTTTACCT 139780 |||| || | || ||||| || |||||||| ||| || | |||||| Sbjct 1772009 TGCCAGTGAGAGTCTTTACAAAAATTTGCAT--CTTGATATATTACCT 1771964 Score = 105 bits (116), Expect = 7e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| ||| ||| ||||||||||| ||||| || ||| | ||| || Sbjct 535053 AACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTC 534994 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || || ||||||||| | |||| ||| |||||||| || || ||||| || ||||| | Sbjct 534993 CAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTC-TT 534935 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | |||| || | | || | |||||| | || || || |||| || | |||| Sbjct 534934 GAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCT 534875 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || ||||| || ||||||||| Sbjct 534874 TGCCAGTGAGAGTCTTTACAAAAATTTGCATA 534843 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| || ||| ||||||||||| || || | |||| ||| || Sbjct 534825 AACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTC 534766 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || ||||| || || | |||| | || || || ||||| || || || ||||| | Sbjct 534765 CAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTC-TT 534707 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | |||| || | | || | |||||| ||||||| ||||||| ||| | |||| Sbjct 534706 GAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCT 534647 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || ||||| || ||||||||| Sbjct 534646 TGCCAGTGAGAGTCTTTACAAAAATTTGCATA 534615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063944192800