Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 351 1e-91 >seq5 Length=831028 Score = 351 bits (388), Expect = 1e-91 Identities = 1225/1873 (65%), Gaps = 67/1873 (4%) Strand=Plus/Plus Query 78711 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 78770 ||| | |||||||| |||| | | | || |||| || |||||||| |||| || || Sbjct 46071 GTCGATTGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGT 46130 Query 78771 TTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTG--GAATAACTCGGA 78828 ||| || || ||||||| || || |||||||| || |||||| |||| | || Sbjct 46131 TTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAATG--TTGGT 46188 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 | | | || | ||||| | || || ||||| || ||| ||| || || |||||| Sbjct 46189 TGTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCC 46248 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948 || | |||||| |||||||| ||||||||||| ||||| || | | ||| || | | Sbjct 46249 ATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGT 46308 Query 78949 TCTGGAAGGTTTG---TAT-TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 ||| | | | ||| ||| || | | || | ||| |||| | | | ||| || Sbjct 46309 GGTGGGATTTCTTCAATATGTCTCAAAG-AGCCGTTGTATGCAATAAGCTTTTGCTTCAT 46367 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 || ||||| | | ||| || | | || | ||| |||||||| || Sbjct 46368 AGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAACAAA 46427 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAA---ATATTACTGGTATATGGTTCCACCGA 79121 ||||| || |||||| | | ||||| || ||||| |||||||| || | || Sbjct 46428 GAATTCACCGCTCAATACACGTC---TGTAATAGATGTTACTAGTATATGGCTCGAAAGA 46484 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 |||||||||||||||||| |||| || || || || |||||||| |||| |||||| Sbjct 46485 TTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGA 46544 Query 79182 ATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAG------ 79235 ||||| | ||| | | | | ||| | | || || | ||||| |||||||| Sbjct 46545 GTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATCCCAGTCCCAAAGCTTGTT 46604 Query 79236 ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCC 79295 |||| || | | || ||||||||| | || | || ||| | | ||| || || Sbjct 46605 ATCA-ACAGTAGCACC--CCAAAGATCGAACTGCAAAAGACCTTGAGAAGCAGGCGAACC 46661 Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTA--ATGCT 79353 || |||| |||||| | || | ||||||||| || | | | | ||| | | Sbjct 46662 TGGATATGAGTCATAATGACCATACTTTTCGGCCAA---AGAGATAGACTCATCCAGACA 46718 Query 79354 C-CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTC-TAGGCTATCAA 79411 | | |||||||| ||||| || || ||| || || || ||||| | | | |||| Sbjct 46719 CGCATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAGAT-TCAA 46777 Query 79412 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 79471 ||||||| || | || |||| || ||||| |||||||| |||| ||| ||||| | Sbjct 46778 ATGGATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCC 46837 Query 79472 TATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 79531 | || | ||| ||| |||||| | || || || || |||| || |||| Sbjct 46838 TGTGACGGAAATTTGAATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATTT 46897 Query 79532 TATTGAGATTCCTGACTAT-TACTTTGACC--ACATCCTTTA--GTTTGAGAAAATCAAA 79586 || | ||| ||| || | || | ||| | || | || |||||||| Sbjct 46898 GGTTCAAATTG-----TATGTAATGACACGTGAGATCTTGTAAAGCTTCTTGAAATCAAA 46952 Query 79587 --TCGTC-CATC--TATTA-CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGC 79640 || || | || ||||| ||||||| || |||| || |||| ||||| || || Sbjct 46953 AGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGC 47012 Query 79641 TACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGT 79700 || || || ||| | ||| |||| |||||| ||| | ||| | | || ||||| Sbjct 47013 AACTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGGT 47072 Query 79701 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGT 79760 || | ||| | ||| ||| ||| ||| || |||||||| ||||| || |||| || Sbjct 47073 ACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCGT 47132 Query 79761 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 79820 |||||||||||| ||| || || || || ||| | | | || || | Sbjct 47133 ACCAGTTTCAATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGATGGT--- 47189 Query 79821 CTTGTATCTCTTTTCT-CTT--TCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCC 79875 ||| | | | ||| || || | ||||| | | | || || || || ||| Sbjct 47190 CTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCC--TCAAATTCATCACCC 47247 Query 79876 CAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCC 79935 || || || | || || || |||||||| ||||| | | ||| | | ||| | || Sbjct 47248 CAGACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCC 47307 Query 79936 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCT 79994 | || ||||||||||| | |||||| ||||| || || ||| || |||||||| | ||| Sbjct 47308 TCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGC-ATAGAAGAGATCTCTTGCTCT 47366 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 ||||| || || || ||||| | | | | ||||| | |||||| Sbjct 47367 CAAATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCA 47426 Query 80055 CGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCT 80114 || ||||| |||||||| | ||| || ||| || |||||||| | || | Sbjct 47427 TGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCACCCCCCTGATCAACATACTT 47486 Query 80115 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA-TGTACCATTGGT-C 80172 ||||| | ||| | | | ||||||||||| ||||||||| || ||| ||||| || | Sbjct 47487 GGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGT-CCATTTGTAC 47545 Query 80173 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 80232 || || ||||| ||||| ||||| || || ||||| || |||||||| || || Sbjct 47546 CCCGA-ATATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCT 47604 Query 80233 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCA 80292 ||| ||| || || || | | | |||| | || || | | |||||| Sbjct 47605 GATTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCT 47664 Query 80293 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 80352 ||| | | | ||||||| ||||||||| | ||| | ||||| |||||||||| Sbjct 47665 TGCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGC 47724 Query 80353 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 80412 || |||| |||||| ||||| | |||| || || | ||| || |||| | | Sbjct 47725 GTTGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAACTGTACGT 47784 Query 80413 TCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || | ||| ||| | || ||||| | | |||||||||||||||||| ||||| | ||| Sbjct 47785 TCGACATCACCACAG-TGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTC 47843 Query 80472 AACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATA 80531 ||||||||||| || | |||||| || || |||||| |||||||| ||||| || Sbjct 47844 CACGATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTA 47903 Query 80532 GTTGTA-TGAAAA 80543 | ||| |||||| Sbjct 47904 ATCGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268719194760