Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 >seq2 Length=1844256 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||| || | ||||| || | ||| ||||||||||| | |||||||| ||| Sbjct 535070 CCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGAC 535011 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||||||| |||| |||| ||| || || ||||||||||| ||||| ||||| | || Sbjct 535010 AATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGA 534951 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | ||||| | ||| |||||| | || || || Sbjct 534950 ATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACT 534891 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || ||||| || |||||||||||||| Sbjct 534890 TCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| || | ||||| || | ||||||||||||||| | ||||| || || Sbjct 534842 CCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAG 534783 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| |||||||||||| |||||||| | |||||| || | || Sbjct 534782 AGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGG 534723 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || ||| | ||||| | ||| ||||||| | |||||| Sbjct 534722 ATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACC 534663 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || ||||| || |||||||||||||| || Sbjct 534662 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATT 534613 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| || | ||||| || | ||| ||||||||||| | || ||||| || Sbjct 1772205 CCACCACGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAG 1772146 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| |||| ||| || || ||||||||||| | ||| || || | || Sbjct 1772145 AGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGA 1772086 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| || | ||||| | ||| |||||||| | |||||| Sbjct 1772085 ATGCCCTCTTTGTC-CTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGAC 1772027 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || ||||| || |||||||||||||| || Sbjct 1772026 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTT 1771976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369558168522