Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 260 2e-64 >seq5 Length=831028 Score = 260 bits (288), Expect = 2e-64 Identities = 1168/1829 (64%), Gaps = 53/1829 (3%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 || |||||||| |||| |||||||| || || ||||||| ||||| |||||||| Sbjct 46108 GTGCGTAGATAATACACACCTGTTTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTT 46167 Query 70891 GTTAGTTTG--GAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGA 70948 || |||||| |||| | || | | |||| |||||| | ||||| ||||| | Sbjct 46168 GTCAGTTTGCTGAATG--TTGGTTGTTCCATGTAAATATTGAGGGACTGCGACTGATCTA 46225 Query 70949 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 71008 | ||| ||| || || |||||||| | |||||| |||||||| ||||||||||| | Sbjct 46226 TAAAGATTCCTCTATCCGCAGCCATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTG 46285 Query 71009 TTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TAT-TCTGAATGGATCCACCA 71064 |||| || | | ||| || | | ||| | | | ||| ||| || | | || Sbjct 46286 TTTTGTACAATTCCTTTATGTGTGGTGGGATTTCTTCAATATGTCTCAAAG-AGCCGTTG 46344 Query 71065 TCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTA 71124 | |||||||| | | | || || || ||||| | | ||| || | | Sbjct 46345 TATGCAATAAGCTTTTGCTTCATAGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTG 46404 Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA---ATA 71181 || | ||| |||||||| || ||||| || |||||| ||| ||||| || Sbjct 46405 AGCAAATGTGGATTAACAACAAAGAATTCACCGCTCAATAC---ACGTCTGTAATAGATG 46461 Query 71182 TTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 71241 ||||| ||||| || || | || ||||||||||||||||| |||| || || ||||| Sbjct 46462 TTACTAGTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTA 46521 Query 71242 GGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGA 71301 |||||||| |||| |||| | ||||| | ||||||| | ||| | | || || Sbjct 46522 GGCATAGGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGG 46581 Query 71302 GATTCCCAATTCCAAAGATC-----CGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNA 71356 | ||||| | |||||| | | | ||| || | Sbjct 46582 GCATCCCAGTCCCAAAGCTTGTTATCAACAGTAGCACCCCAAAGATCGAACTGCAAAAGA 46641 Query 71357 TGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTT 71416 || | | ||| || |||| ||||| || || | || | |||||||| | Sbjct 46642 --CCTTGAGAAGCAGGCGAACCTGGATATGAGTCATAATGACCATACTTTTCGGCCAA-- 46697 Query 71417 CACAACTCGCCTCTA--ATGCTC-CATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT 71473 | | | | ||| | | | |||||||||| ||||| || || ||| || || | Sbjct 46698 -AGAGATAGACTCATCCAGACACGCATAATAAATAGTTTCAAATATACGCTTGTTCAGCT 46756 Query 71474 CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 71533 | ||||| ||||||||||| || | || |||| || ||||| |||| Sbjct 46757 CCCTGGCTTCATCAGATTCAAATGGATAGCGCAACAACATGAACGTATCAGCTAAACCTT 46816 Query 71534 GAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 71593 |||| |||| ||| ||||| ||||| | ||| ||| |||||| | || | Sbjct 46817 GAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATACCTAGCTTCCTTCACTGGGT 46876 Query 71594 AATAATTAATATCTATAATTTTATTGAGATT-TCTGACTATTACTT-TGACCACATCCTT 71651 | || || |||| || |||| || | ||| | || || || ||| ||| | Sbjct 46877 AGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTA-ATGACACGTGAG---ATCTTG 46932 Query 71652 TA--GTTTGAGAAAATCAAA-----TCTCCCATCTATTA-CAAACACGTTCAAGGCAACA 71703 || | || |||||||| ||||| ||||| |||||| || || | Sbjct 46933 TAAAGCTTCTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATT 46992 Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || |||| ||||| || || || || || ||| | ||| |||| ||||||| ||| Sbjct 46993 GAAGCCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACAATTTCACAGCAC 47052 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 | || | | || ||||| || | ||| | ||| ||| ||| ||| || |||||| Sbjct 47053 AAGTTGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCC 47112 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || ||||| ||| |||| |||||||||||||| ||| || || || || ||| | Sbjct 47113 TTGTAAAGCATATACGGCGTACCAGTTTCAATTTGACTTTGTAAGATTGCAAACCATAAC 47172 Query 71884 ACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAATC 71941 | | || || | || | || ||| || | ||||| | | | Sbjct 47173 TTTTGTGCGGGGATGGTCTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCC 47232 Query 71942 GTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 || || || || ||||| | | | || || || || | || ||||| | | Sbjct 47233 --TCAAATTCATCACCCCAGACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAG 47290 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 72060 ||| | | ||| | | | || ||||||||||| | |||||| ||||| || || ||| Sbjct 47291 TCCAATTTTCATTAGCCTCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGC-ATAG 47349 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || |||||||| | ||| ||||| || || || ||||| | | | Sbjct 47350 AAGAGATCTCTTGCTCTCAAATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTA 47409 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | ||||| | |||||| || ||||| |||||||| | ||| | ||| || Sbjct 47410 AATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCACCC 47469 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 |||||||| | || | ||||| | ||| | | | ||||||||||| ||||||||| Sbjct 47470 CCCTGATCAACATACTTGGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTA 47529 Query 72241 GATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAG 72299 || ||||| || ||| || ||||| ||||| ||||| || ||| ||||| || Sbjct 47530 GACTGTCCATTTGTACCCCGA-ATATATGAACCACTCGCACGTATTTTGTGAATTGCAAG 47588 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 |||||||| || || ||| ||| || || || | | | |||| | || || Sbjct 47589 GCCTATTCCACCAGCTGATTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCC 47648 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 | | | |||||| ||| | | | ||||||| ||||||||| | ||| | || Sbjct 47649 TGCAAGAGAATCATCTTGCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGT 47708 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||| |||||||||| || |||| |||||| ||||| | |||| || || | ||| Sbjct 47709 TCCTGCATTAAATAGCGTTGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTA 47768 Query 72480 CGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 || |||| | ||| | ||| ||| | || ||||| | | |||||||||||||| Sbjct 47769 TGTTTCAACTGTACGTTCGACATCACCACAG-TGGATTCCCGCGGAGACACGCATTAACA 47827 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | || ||||| | ||| ||||||||||| || | |||||| || || |||||| | Sbjct 47828 TGTGTTGAGGGCGTTCCACGATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATG 47887 Query 72599 TTTTAAAACCAAAATAGTTGTA-TGAAAA 72626 ||||||| ||||| || | ||| |||||| Sbjct 47888 TTTTAAATCCAAAGTAATCGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139124496840