Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 >seq2 Length=1844256 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| || | ||| || ||||| ||| || ||||| |||||||| || Sbjct 534842 CCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAG 534783 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | |||| || | ||||||||| ||| | ||||| | |||||||| || Sbjct 534782 AGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGG 534723 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| ||| ||||| ||| ||| | || || || ||||| || || Sbjct 534722 ATACCCTCCTTGTCTTGAATCTTTGC-CTTGACATTCTCAATCGTGTCGCTGGGCTCGAC 534664 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || ||||| |||||||||||||||||||| Sbjct 534663 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATT 534613 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| || | ||| || ||||| || || ||||| ||||| ||||| Sbjct 1772205 CCACCACGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAG 1772146 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | |||| || | ||| || ||||| | ||||| | || ||||| ||| Sbjct 1772145 AGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGA 1772086 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| ||| ||| ||| ||| |||| || || ||||| || || Sbjct 1772085 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACC 1772026 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || ||||| ||||||||||||||||| || Sbjct 1772025 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTT 1771976 Score = 107 bits (118), Expect = 1e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| || | ||| || ||||| || || ||||| ||||||||||| Sbjct 535070 CCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAG-- 535013 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || |||| || | ||| || ||||| | |||||||| || || || | Sbjct 535012 ACAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGG 534953 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| || || ||||| ||| ||||| ||| ||| | || || || || ||| ||| Sbjct 534952 GAATGCCCTCCTTGTCTTGAATCTTTGC-CTTGACATTCTCAATTGTGTCACTAGGTTCA 534894 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | |||||||| || || || ||||| |||||||||||||||||| Sbjct 534893 ACTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATA 534843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179160273469