Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2 114 8e-21 >seq2 Length=1844256 Score = 114 bits (126), Expect = 8e-21 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 33178 CTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAA 33237 ||| ||||| || |||||||||||||| | || ||| |||| |||||| ||| ||| Sbjct 535035 CTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAA 534976 Query 33238 TATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTAC 33294 || ||||| ||||| |||| ||| ||||| || || || |||| |||| | || Sbjct 534975 AATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGAATCTTTGCCT---TGAC 534919 Query 33295 TGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTT 33354 | | ||| ||||| | |||| ||| || ||||| || || || || || ||||| || Sbjct 534918 ATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTT 534859 Query 33355 TACGAAAATTTGCAT 33369 ||| ||||||||||| Sbjct 534858 TACAAAAATTTGCAT 534844 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 33178 CTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAA 33237 ||| ||||| || || ||||| || | | | | ||| |||| |||||| ||| ||| Sbjct 1772170 CTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAA 1772111 Query 33238 TATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTAC 33294 || || | |||||||| | || ||||| ||||| || |||| |||| | || Sbjct 1772110 AATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCT---TGAC 1772054 Query 33295 TGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTT 33354 ||| ||| |||||| |||| | || || || || || || || || || ||||| || Sbjct 1772053 ATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTT 1771994 Query 33355 TACGAAAATTTGCATGTTTAT 33375 ||| ||||||||||| || || Sbjct 1771993 TACAAAAATTTGCATCTTGAT 1771973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777565034082