Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 163 7e-35 >seq2 Length=1844256 Score = 163 bits (180), Expect = 7e-35 Identities = 153/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| ||||| || || ||||| | |||||| || ||||| || ||||||||| Sbjct 1772169 TCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAA 1772110 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | |||||| || || ||||| || || ||||| ||||||||||| || || |||||| Sbjct 1772109 ATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTT 1772050 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||||| || || ||||| || || || ||||| ||||| || || |||||| Sbjct 1772049 TCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACA 1771990 Query 104549 AATATCTGCATTTTG 104563 || || ||||| ||| Sbjct 1771989 AAAATTTGCATCTTG 1771975 Score = 154 bits (170), Expect = 3e-32 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || ||||| || ||||| | |||||| || |||||||| || || ||| Sbjct 534806 TCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAA 534747 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | ||||||||| || ||||| || || || || || ||||||||||| || ||||| Sbjct 534746 ATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTC 534687 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||||| || || ||||| || || || ||||| ||||| || || |||||| Sbjct 534686 TCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACA 534627 Query 104549 AATATCTGCATTTTG 104563 || || ||||| ||| Sbjct 534626 AAAATTTGCATATTG 534612 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || || ||||| | || | ||||| || ||||| || ||||||||| Sbjct 535034 TCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAA 534975 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||| ||||| || || || || || || || ||||||||||| || ||||| Sbjct 534974 ATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTC 534915 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || |||||||| || || || ||||| ||||| ||||| || || |||||| Sbjct 534914 TCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACA 534855 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 534854 AAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398267229372