Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 >seq2 Length=1844256 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48498 AACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAG 48557 |||| ||||||||||| | || || ||||| || ||||||||||||||||||||||||| Sbjct 535072 AACCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAG 535013 Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 |||| || |||||||||| |||||||| | |||| ||||||||||||||| | Sbjct 535012 ACAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGG 534953 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||| ||| || ||||| | | | || || || ||| || Sbjct 534952 GAATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAA 534893 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || |||||||| || |||||||| ||||| Sbjct 534892 CTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||||||| | || || ||||| ||||||||||||||||||||||| || | Sbjct 534843 ACCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGA 534784 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || |||||||||| || || ||| || |||| || | ||| || || | Sbjct 534783 GAGAGTG-CGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAG 534725 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||||| ||| || ||||| | | | || || ||| | | ||| Sbjct 534724 GGATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGA 534665 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || |||||||| || |||||||| ||||| Sbjct 534664 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534616 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||||||| | || || ||||| || ||||||||||||||||| ||||| | Sbjct 1772206 ACCACCACGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGA 1772147 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||||||||| |||||||| | |||| || | |||||| || || Sbjct 1772146 GAGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGG 1772087 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || |||||| ||| || ||||| | | || || ||| | | ||| Sbjct 1772086 AATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGAC 1772027 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || || |||||||| || |||||||| |||||| || Sbjct 1772026 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTTG 1771975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251153794009