Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 >seq2 Length=1844256 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||||||| | |||| |||||||| | ||||||||| | || || || |||| Sbjct 1772187 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCG--AGAGAGTACGACCGTCCT 1772130 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||| || || || |||| || || || ||||| ||||||||||| || |||||||| | Sbjct 1772129 CCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCT 1772070 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || |||||||| | | ||||| | | ||||| |||| |||||||| | Sbjct 1772069 GAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCT 1772010 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| || ||||| || ||||| Sbjct 1772009 TGCCAGTGAGAGTCTTTACAAAAATTTGCAT 1771979 Score = 111 bits (122), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | ||| | | |||||||| | ||| |||||||| | Sbjct 534855 AAAAATTTGCATACCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAAT 534796 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | | || || || |||||||| ||||| ||| | || || || || Sbjct 534795 GTTGTAGTC--TGAGAGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTC 534738 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || |||||||| ||||| || ||||| | ||| ||||||||||| | | ||| Sbjct 534737 TGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATCGTG 534678 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | ||||| |||| |||||||| || ||||| ||||| || ||||| || ||| Sbjct 534677 TCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGC 534618 Query 95006 AT 95007 || Sbjct 534617 AT 534616 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 |||||||| | |||| |||||||| | ||| ||||| || || || | |||| Sbjct 535052 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCG--TCCT 534995 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||| || || || |||| || || | |||||||| || ||||| || || ||||| | Sbjct 534994 CCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTT 534935 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| ||||||||||| | | |||||| | || || |||| || ||||| | Sbjct 534934 GAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCT 534875 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| || ||||| || ||||| Sbjct 534874 TGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291149567240