Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-20 >seq3 Length=2150608 Score = 111 bits (122), Expect = 2e-20 Identities = 189/269 (70%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||| | | | || || || ||||| || || ||||||||||| || || Sbjct 1694041 GCCAAGCGCCATCGTA-AGGTGTTGCGTGACAACATTCAGGGCATCACCAAGCCCGCCAT 1693983 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||| || | ||||| ||||||||| ||||||| | | || || ||| | Sbjct 1693982 AAGAAGATTGGCCCGCAGAGGTGGTGTCAAGCGTATCTCTGGTCTCATATACGAGGAGGT 1693923 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTATACCG 16610 | | ||| |||||| |||||||| ||| |||| || | || | | || | |||||||| Sbjct 1693922 CAGAGGTGTCTTGAAGGTCTTCCTCGAGAACGTTGTCAAGGACTCCGTTAC-CTATACCG 1693864 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | |||||||| || | ||||| || ||||| || | || | |||| Sbjct 1693863 AGCACGCCCGCAGAAAGACTGTGACTGCTATGGACATTGTCTACTCACTCAAGAGACAAG 1693804 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||| ||||| || ||||| Sbjct 1693803 GAAGAACCCTTTACGGTTTCGGTGGTTAA 1693775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075191771237