Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 239 6e-58 >seq5 Length=831028 Score = 239 bits (264), Expect = 6e-58 Identities = 1193/1871 (64%), Gaps = 63/1871 (3%) Strand=Plus/Plus Query 61988 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 62047 ||| | |||||||| |||| | | | || |||| || |||||||| |||| || || Sbjct 46071 GTCGATTGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGT 46130 Query 62048 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG--GAATAACTCGGA 62105 ||| || || ||||||| ||||| |||||||| || |||||| |||| | || Sbjct 46131 TTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAATG--TTGGT 46188 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 | | | || | ||||| | || || ||||| || ||| ||| || || |||||| Sbjct 46189 TGTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCC 46248 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62225 || | |||||| |||||||| ||||||||||| ||||| || | | ||| || | | Sbjct 46249 ATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGT 46308 Query 62226 TCTGGAAGGTTTG---TAT-TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 ||| | | | ||| ||| || | | || | ||| |||| | | | ||| || Sbjct 46309 GGTGGGATTTCTTCAATATGTCTCAAAG-AGCCGTTGTATGCAATAAGCTTTTGCTTCAT 46367 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62341 || ||||| | | ||| || | | || | ||| |||||||| || Sbjct 46368 AGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAACAAA 46427 Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAA---ATATTACTGGTATACGGTTCCACCGA 62398 ||||| || |||||| | | ||||| || ||||| ||||| || || | || Sbjct 46428 GAATTCACCGCTCAATACACGTC---TGTAATAGATGTTACTAGTATATGGCTCGAAAGA 46484 Query 62399 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62458 ||||||||||||||||| |||| || || ||||| |||||||| |||| |||||| Sbjct 46485 TTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGA 46544 Query 62459 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC--- 62515 ||||| | ||| | | || | ||| | | || || | ||||| | |||||| | Sbjct 46545 GTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATCCCAGTCCCAAAGCTTGTT 46604 Query 62516 --CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCT 62573 | || ||| || || | || ||| | | || ||| ||| Sbjct 46605 ATCAACAGTAGCACCCCAAAGATCGAAC--TGCAAAAGACCTTGAGAAGCAGGCGAACCT 46662 Query 62574 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA--ATGCAC 62631 ||||| || || | || | ||| || || | | | | | ||| | ||| Sbjct 46663 GGATATGAGTCATAATGACCATACTTTTCGGCCAA---AGAGATAGACTCATCCAGACAC 46719 Query 62632 -CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAA 62688 | |||||||| ||||| || || ||| || || || ||||| ||| | ||| Sbjct 46720 GCATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAGATT--CAA 46777 Query 62689 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 ||||||| || | || |||| || ||||| |||||||| |||| ||| ||||| | Sbjct 46778 ATGGATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCC 46837 Query 62749 TATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807 | || | ||| || || | |||||| | || || || || |||| || ||| Sbjct 46838 TGTGACGGAAATTTGA-ATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATT 46896 Query 62808 TTATTGAGATT-TCTGACAATTACTT-TGACCACATCCTTCAGTTTGAGAAAATCAAA-- 62863 | || | ||| | || ||| || ||| | | | || || |||||||| Sbjct 46897 TGGTTCAAATTGTATGT-AATGACACGTGAGATCTTG-TAAAGCTTCTTGAAATCAAAAG 46954 Query 62864 ---TCGCCCATCTATTA-CAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTA 62919 || || ||||| ||||||| || || | || |||| ||||| || || | Sbjct 46955 TCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAA 47014 Query 62920 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 62979 | || || ||| | ||| |||| || ||| ||| | || | | || || || | Sbjct 47015 CTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGGTAC 47074 Query 62980 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63039 | | ||| | ||| ||| ||| ||| || |||||||| ||||| || | || |||| Sbjct 47075 CCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCGTAC 47134 Query 63040 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63099 |||||||||| ||| || || || || ||| | | | || || | | Sbjct 47135 CAGTTTCAATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGATGGTC---T 47191 Query 63100 TGTATCTC---CTTTCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCA 63154 | | | | || ||| || | ||||| | | | || || || || ||||| Sbjct 47192 TACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCC--TCAAATTCATCACCCCA 47249 Query 63155 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63214 || | | ||| || || || || || ||||| | | ||| | | | | | ||| Sbjct 47250 GACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTC 47309 Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 63273 || ||||||||||| | |||||| ||||| || || ||| || |||||||| | ||| Sbjct 47310 AACGCGTTTCATAAACAAATCAGGGATCCATAGCGC-ATAGAAGAGATCTCTTGCTCTCA 47368 Query 63274 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333 ||||| || || || ||||| | | | | ||||| | |||||| | Sbjct 47369 AATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCATG 47428 Query 63334 GTTCCAAGTATATGGCCAT--AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63391 | ||||| |||||||| | ||| || | ||| || |||||||| | || | Sbjct 47429 GCTCCAAATATATGGCAAACGAACCCCTT--CTTTTACCACCCCCCTGATCAACATACTT 47486 Query 63392 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63451 ||||| | ||| | | | ||||||||||| |||||| || || ||||| ||||| Sbjct 47487 GGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGTCCATTTGTACC 47546 Query 63452 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 63511 ||||| ||||| ||||| || || ||||| || |||||||| || || Sbjct 47547 CCGAATATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCTGA 47606 Query 63512 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGAT 63571 ||| ||| || || || | | | || | | || || | | |||||| Sbjct 47607 TTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCTTG 47666 Query 63572 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63631 ||| | | | ||||||| ||||||||| | ||| | ||||| |||||||||| || Sbjct 47667 CATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGCGT 47726 Query 63632 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63691 |||| |||||| ||||| | |||| | || | ||| || |||| | || Sbjct 47727 TGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAACTGTACGTTC 47786 Query 63692 TATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750 | ||| ||| | || ||||| | | |||||||||||||||||| ||||| | ||| | Sbjct 47787 GACATCACCACAG-TGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTCCA 47845 Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 ||||||||||||| | |||||| || || |||||| |||||||| ||||| || | Sbjct 47846 CGATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTAAT 47905 Query 63811 TGTA-TGAAAA 63820 ||| |||||| Sbjct 47906 CGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947129918440