Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=1844256 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | |||||||| || | ||||| || | || ||| | || |||||| | Sbjct 1771975 CAAGATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCC 1772034 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||| || || | ||||| |||||| |||||||| ||||| ||||| || Sbjct 1772035 CAGCGACACAATTGAAAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGA 1772094 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| |||||| | || |||||||| || || | | | || ||||| Sbjct 1772095 CCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAGGACGGTCGTACTCTCTCGGATTA 1772154 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||| || ||| |||| || || | || ||| | || || Sbjct 1772155 TAACATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGTTGCGTGGTGG 1772205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | ||||| || | ||||| | ||||| || | | Sbjct 534844 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATTACTCTTGAAGTTGAACCTAGT 534903 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | ||||| ||||||| ||||| || ||||| || || ||||| Sbjct 534904 GACACAATTGAGAATGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAG 534963 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAAC-GTCAGCGATTATA 24168 ||| | |||||| | || |||||||| || || | || | | ||| | |||| | Sbjct 534964 CAGCGTTTGATTTTTGCTGGTAAGCAACTGGAGGACGGACGTACATTGTCTG--ATTACA 535021 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||| || ||| |||| || || | || ||| | || || Sbjct 535022 ACATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGTTGCGCGGTGG 535070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935952841395