Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 seq2 127 1e-24 >seq4 Length=637648 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| | |||||||| || |||||||| Sbjct 182436 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGCAGATAGGGACAGTGGGAATCTCGT 182495 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 182496 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 182530 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||||||||||||||||| ||||||||||| | Sbjct 184369 CTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTAAACTATCGGTCTCACAC 184428 Query 20009 TAATATTTAGCCTTAT 20024 ||||||||||||||| Sbjct 184429 CAATATTTAGCCTTAT 184444 >seq2 Length=1844256 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | ||| | | ||||| |||||||| |||||||||||||| ||||||||||| Sbjct 535071 ACCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGA 535012 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| |||| |||| || | ||| || || ||||| || | || || ||||| | ||| Sbjct 535011 CAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGG 534952 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||| || ||||| ||| ||| ||| ||||||| | || || | | |||||| Sbjct 534951 AATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAAC 534892 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||||| || || || || | || || || || || ||||| Sbjct 534891 TTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 89.7 bits (98), Expect = 3e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| | | ||||| ||||||||||||||||||||||| ||||| || | Sbjct 534844 TACCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTG 534785 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || |||| || | |||||| ||||| || || | | ||||| || | | Sbjct 534784 AGAGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAG 534725 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 ||| || || ||||| ||| ||| ||| ||||||| Sbjct 534724 GGATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTCT 534686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947163260479