Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 250 3e-61 >seq5 Length=831028 Score = 250 bits (276), Expect = 3e-61 Identities = 1201/1873 (64%), Gaps = 67/1873 (4%) Strand=Plus/Plus Query 61843 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 61902 ||| | |||||||| |||| | | | || |||| || |||||||| |||| || || Sbjct 46071 GTCGATTGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGT 46130 Query 61903 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG--GAATAACTCGGA 61960 ||| || || ||||||| ||||| |||||||| || |||||| |||| | || Sbjct 46131 TTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAATG--TTGGT 46188 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 | | | || | ||||| | || || ||||| || ||| ||| || || |||||| Sbjct 46189 TGTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCC 46248 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62080 || | ||| || |||||||| ||||||||||| ||||| || | | ||| || | | Sbjct 46249 ATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGT 46308 Query 62081 TCTGGAAGGTTTG---TAT-TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 ||| | | | ||| ||| || | | || | ||| |||| | | | ||| || Sbjct 46309 GGTGGGATTTCTTCAATATGTCTCAAAG-AGCCGTTGTATGCAATAAGCTTTTGCTTCAT 46367 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62196 || ||||| | | ||| || | | || | ||| |||||||| || Sbjct 46368 AGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAACAAA 46427 Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAA---ATATTACTGGTATACGGTTCCACAGA 62253 ||||| || |||||| | | ||||| || ||||| ||||| || || | ||| Sbjct 46428 GAATTCACCGCTCAATACACGTC---TGTAATAGATGTTACTAGTATATGGCTCGAAAGA 46484 Query 62254 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62313 ||||||||||||||||| |||| || || ||||| |||||||| |||| |||||| Sbjct 46485 TTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGA 46544 Query 62314 ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC--- 62370 ||||| | ||| | | || | ||| | | || || | ||||| | |||||| | Sbjct 46545 GTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATCCCAGTCCCAAAGCTTGTT 46604 Query 62371 --CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCT 62428 | || ||| || || | || ||| | | || ||| ||| Sbjct 46605 ATCAACAGTAGCACCCCAAAGATCGAAC--TGCAAAAGACCTTGAGAAGCAGGCGAACCT 46662 Query 62429 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA--ATGCAC 62486 ||||| || || | || | ||| || || | | | | | ||| | ||| Sbjct 46663 GGATATGAGTCATAATGACCATACTTTTCGGCCAA---AGAGATAGACTCATCCAGACAC 46719 Query 62487 -CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTC--CAGGCTATCAA 62543 | |||||||| ||||| || || ||| || || || ||||| ||| | ||| Sbjct 46720 GCATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAGATT--CAA 46777 Query 62544 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 ||||||| || | || |||| || ||||| |||||||| |||| ||| ||||| | Sbjct 46778 ATGGATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCC 46837 Query 62604 TATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 | || | ||| || || | |||||| | || || || || |||| || ||| Sbjct 46838 TGTGACGGAAATTTGA-ATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATT 46896 Query 62663 TTATTGAGATT-TCTGACAATTACTT-TGACCACATCCTTCAGTTTGAGAAAATCAAA-- 62718 | || | ||| | || ||| || ||| | | | || || |||||||| Sbjct 46897 TGGTTCAAATTGTATGT-AATGACACGTGAGATCTTG-TAAAGCTTCTTGAAATCAAAAG 46954 Query 62719 ---TCGCCCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTA 62774 || || ||||| ||||||| || || | || |||| ||||| || || | Sbjct 46955 TCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAA 47014 Query 62775 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 62834 | || || ||| | ||| |||| || ||| ||| | || | | || ||||| | Sbjct 47015 CTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGGTAC 47074 Query 62835 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 62894 | | ||| | ||| ||| ||| ||| || |||||||| ||||| || | || |||| Sbjct 47075 CCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCGTAC 47134 Query 62895 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 62954 |||||||||| ||| || || || || ||| | | | || || | | Sbjct 47135 CAGTTTCAATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGATGGTC---T 47191 Query 62955 TGTATCTCTTTTCT-CTT--TCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCA 63009 | | | | ||| || || | ||||| | | | || || || || ||||| Sbjct 47192 TACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCC--TCAAATTCATCACCCCA 47249 Query 63010 AACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63069 || | | || || || || || || ||||| | | ||| | | | | | ||| Sbjct 47250 GACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTC 47309 Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 63128 || ||||||||||| | |||||| ||||| || || ||| || |||||||| | ||| Sbjct 47310 AACGCGTTTCATAAACAAATCAGGGATCCATAGCGC-ATAGAAGAGATCTCTTGCTCTCA 47368 Query 63129 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63188 ||||| || || || ||||| | | | | ||||| | |||||| | Sbjct 47369 AATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCATG 47428 Query 63189 GTTCCAAGTATATGGCCAT--AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63246 | ||||| |||||||| | ||| || | ||| || |||||||| | || | Sbjct 47429 GCTCCAAATATATGGCAAACGAACCCCTT--CTTTTACCACCCCCCTGATCAACATACTT 47486 Query 63247 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA-TGTACCATTGGT-C 63304 ||||| | ||| | | | ||||||||||| ||||||||| || ||| ||||| || | Sbjct 47487 GGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGT-CCATTTGTAC 47545 Query 63305 CCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 63364 || || ||||| ||||| ||||| || || ||||| || |||||||| || || Sbjct 47546 CCCGA-ATATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCT 47604 Query 63365 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 63424 ||| ||| || || || | | | |||| | || || | | | |||||| Sbjct 47605 GATTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCT 47664 Query 63425 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 63484 ||| | | | ||||||| ||||||||| | ||| | ||||| |||||||||| Sbjct 47665 TGCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGC 47724 Query 63485 GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63544 || |||| |||||| ||||| | |||| | || | ||| || |||| | Sbjct 47725 GTTGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAACTGTACGT 47784 Query 63545 TCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 || | ||| ||| | || ||||| | | |||||||||||||||||| ||||| | ||| Sbjct 47785 TCGACATCACCACAG-TGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTC 47843 Query 63604 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63663 |||||||||||||| | |||||| || || |||||| |||||||| ||||| || Sbjct 47844 CACGATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTA 47903 Query 63664 GTTGTA-TGAAAA 63675 | ||| |||||| Sbjct 47904 ATCGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631928716400