Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 >seq2 Length=1844256 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || || || ||||||| | || || ||| | Sbjct 534616 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 534675 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | || ||||| | ||| ||||| || || || || || ||||| Sbjct 534676 GACACGATTGAGAATGTCAAGGCAAAGATTCA-AGACAAGGAGGGTATCCCTCCAGACCA 534734 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | ||||| |||||||||||| | || || | ||||||| | || ||||| Sbjct 534735 ACAGAGGTTGATTTTCGCCGGCAAACAACTGGAGGACGGTCGCACTCTCTCAGACTACAA 534794 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGG 25214 |||||||| || ||| || || || || || ||| Sbjct 534795 CATTCAAAAGGAGAGCACTCTTCACTTGGTTCTTAGG 534831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || || || ||||||| | || || ||| | Sbjct 1771979 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 1772038 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| |||||||| || ||||| || || Sbjct 1772039 GACACAATTGAAAATGTCA---AGGCCAAGATTCA-GGACAAAGAGGGCATTCCTCCAGA 1772094 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | |||||||| || || ||| | || || | ||| ||| | ||||| Sbjct 1772095 CCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAGGACGGTCGTACTCTCTCGGATTA 1772154 Query 25175 CAATATTCAAAAAGA 25189 || |||||||| || Sbjct 1772155 TAACATTCAAAAGGA 1772169 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || || || |||| || | ||||| || | | Sbjct 534844 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATTACTCTTGAAGTTGAACCTAGT 534903 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | || ||||| | ||| ||||| || || ||||| || || || Sbjct 534904 GACACAATTGAGAATGTCAAGGCAAAGATTCA-AGACAAGGAGGGCATTCCCCCGGATCA 534962 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| || || ||| | || || | || || || |||||||| Sbjct 534963 GCAGCGTTTGATTTTTGCTGGTAAGCAACTGGAGGACGGACGTACATTGTCTGATTACAA 535022 Query 25178 TATTCAAAAAGA 25189 |||||||| || Sbjct 535023 CATTCAAAAGGA 535034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327952469335