Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 >seq2 Length=1844256 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||||||||| || ||| | || || || || |||| ||||| || || || Sbjct 534613 AATATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 534672 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || || |||| ||| |||||||||||||||||||| || || || Sbjct 534673 AGCGACACGATTGAGAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATCCCTCCAGAC 534732 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| | | || || ||||||||||| | ||||| ||||| |||| || ||| Sbjct 534733 CAACAGAGGTTGATTTTCGCCGGCAAACAACTGGAGGACGGTCGCACTCTCTCAGACTAC 534792 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||| | || || ||| | | ||||| || ||| Sbjct 534793 AACATTCAAAAGGAGAGCACTCTTCACTTGGTTCTTAGGTTGCGTGGTGGT 534843 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || || || | ||||||||||| ||| | | Sbjct 534844 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATTACTCTTGAAGTTGAACCTAGT 534903 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| ||||||||||||||||| ||||| || ||||| Sbjct 534904 GACACAATTGAGAATGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAG 534963 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || || | ||||| || || | || ||||||||| Sbjct 534964 CAGCGTTTGATTTTTGCTGGTAAGCAACTGGAGGACGGACGTACATTGTCTGATTACAAC 535023 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||||| || || | || || ||| | | |||||||| |||| Sbjct 535024 ATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGTTGCGCGGTGGTT 535072 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| || ||| | || || || || |||| ||||| || || || Sbjct 1771976 AAGATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 1772035 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || || |||| || ||||| ||||| ||||| ||||| || || Sbjct 1772036 AGCGACACAATTGAAAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGAC 1772095 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | | || ||||| || || || | ||||| || || |||| ||||| Sbjct 1772096 CAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAGGACGGTCGTACTCTCTCGGATTAT 1772155 Query 22396 AACATTCAAAAAGA 22409 ||||||||||| || Sbjct 1772156 AACATTCAAAAGGA 1772169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727953961085