Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 143 5e-29 >seq2 Length=1844256 Score = 143 bits (158), Expect = 5e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||| ||| ||||| ||||| || || ||||| || | || || || Sbjct 534824 ACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTCC 534765 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || |||||||| || | || |||||||| || || || || |||||||||||| Sbjct 534764 AGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGA 534705 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| ||| || ||||| ||| | || || || | ||||||||| || Sbjct 534704 ATCTTTGCCTTGACATTCTCAATCGTGTC-GCTGGGCTCGACCTCAAGGGTGATGGTCTT 534646 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTAT 68469 || ||||| ||||| || || || ||||| || ||| Sbjct 534645 GCCAGTGAGAGTCTTTACAAAAATTTGCATATTGGTAT 534608 Score = 131 bits (144), Expect = 3e-25 Identities = 165/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||| ||||| ||||||||||| ||||| || | || || || Sbjct 1772187 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCC 1772128 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || || || || | || || ||||| || |||||||| || ||||| ||| Sbjct 1772127 AGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGA 1772068 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| |||||||| || || ||||| ||| | || || || | ||||||||| || Sbjct 1772067 ATCTTGGCCTTGACATTTTCAATTGTGTC-GCTGGGCTCGACCTCAAGGGTGATGGTCTT 1772009 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTATACC 68475 || ||||| ||||| || || || ||||| || ||| |||| Sbjct 1772008 GCCAGTGAGAGTCTTTACAAAAATTTGCATCTTGATATATTACC 1771965 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||| ||||| ||||| ||||| || | ||| | || || || Sbjct 535052 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCC 534993 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || || || || | | || || || || |||||||| |||||||||||| Sbjct 534992 AGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGA 534933 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| ||| || ||||| | ||| ||||| | || ||||| || Sbjct 534932 ATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTG 534873 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| || || || ||||| Sbjct 534872 CCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622296317480