Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=1844256 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | || || || |||| ||||| || |||||||| |||||||||||||| | Sbjct 535072 AACCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAG 535013 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 |||| || |||| |||| |||||| || ||||| |||| |||||||||||| | Sbjct 535012 ACAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGG 534953 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATT 34075 | | || ||| ||||| ||| ||| || || | || || | ||| ||| || Sbjct 534952 GAATGCCCTCCTTGTCTTGAATCTTTGCCT---TGACATTCTCAATTGTGTCACTAGGTT 534896 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || || || || || || || || || ||||| |||||||| Sbjct 534895 CAACTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062356447218