Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 >seq5 Length=831028 Score = 165 bits (182), Expect = 1e-35 Identities = 922/1463 (63%), Gaps = 46/1463 (3%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || || || |||| || || ||||| |||| ||||| |||| | ||||| | | Sbjct 46111 CGTAGATAATACACACCTGTTTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTC 46170 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||| || |||||| ||||||| | | || | || || ||||| || ||| Sbjct 46171 AGTTTGCTGAATGTTGGTTGTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAG 46230 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 ||| | |||||| |||||||| || | ||| ||| |||||||| || ||| || Sbjct 46231 ATTCCTCTATCCGCAGCCATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTG 46290 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTG 113836 || | | ||| || | |||||| || | |||| | | ||||| ||| Sbjct 46291 TACAATTCCTTTATGTGTGGTGGGATTTCTTCAATATGTCTCAAAGAGCCG------TTG 46344 Query 113837 A---CCATGAGATC---CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 | || || | ||||||| || |||||| |||| | | || | Sbjct 46345 TATGCAATAAGCTTTTGCTTCATAGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTG 46404 Query 113891 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | | ||| ||| ||||||| || ||||| | ||||| |||||| || Sbjct 46405 AGCAAATGTGGATTAACAACAAAGAATTCACCGCTCAATACACGTCTGTAATAGATGTTA 46464 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | || |||||||| || | ||||| || ||||| || || | ||| ||||| || ||| Sbjct 46465 CTAGTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGC 46524 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 || || |||| || | ||| | | ||| | || | || | | |||| ||||| Sbjct 46525 ATAGGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCA 46584 Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTC--------CCCCTGCCACATATCAAACTGGAGGA 114122 |||||||| | ||||| | || | || ||| | ||| ||||| | | Sbjct 46585 TCCCAGTCCCAA---AGCTTGTTATCAACAGTAGCACC--CCAAAGATCGAACTGCAAAA 46639 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATT 114182 |||||| || || ||||| || | ||| || || | || | || ||||| Sbjct 46640 GACCTTGAGAAGCAGGCGAACCTGGATATGAGTCATAATGACCATACTTTTCGGCCAAA- 46698 Query 114183 CGGAGCTCGCCTCG---AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 ||| | | ||| || || | ||| || || ||||| || || |||| Sbjct 46699 --GAGATAGACTCATCCAGACACGCATAATAAATAGTTTCAAATATACGCTTGTTCAGCT 46756 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 114299 || |||| || || || ||||| | || |||| || || ||| || | ||||| Sbjct 46757 CCCTGGCTTCATCAGATTCAAATGGATAGCGCAACAACATGAACGTATCAGCTAAACCTT 46816 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 114359 | || || | ||||| || | || | | ||| || | | ||| || ||| || | Sbjct 46817 GAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATACCTAGCTTCCTTCACTGGGT 46876 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 | | || ||||| || | || | ||| | || | || || ||| | | || Sbjct 46877 AGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTAATGACACGTGAGATCTTGTAAA 46936 Query 114420 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 114479 |||| | | |||||||| | ||| | ||| ||| || |||| | |||||||| | Sbjct 46937 GCTTCTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAG 46996 Query 114480 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 114539 ||| ||||| |||| || | ||||||| |||| || |||||| ||||| | Sbjct 46997 CCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGT 47056 Query 114540 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 114599 | ||| || ||||| |||| |||||||| || || |||| ||| || |||||||||| Sbjct 47057 TGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGT 47116 Query 114600 AAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT--GAGAATAGCCTTCCAGACATC 114657 ||||||| || ||||| || || || ||| ||||| | || || ||| | | Sbjct 47117 AAAGCATATACGGCGTACCAGTTTCAATTT--GACTTTGTAAGATTGCAAACCATAACTT 47174 Query 114658 GGCGGCTGGCACAGTGGCGTT--GGCTC-GCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 114714 || || | ||| || ||| | || | | || ||||| ||||| || || Sbjct 47175 TTGTGCGGGGA---TGGTCTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGC 47231 Query 114715 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC-CTTATCTGGGCAGAAGAGAG 114773 ||||| || |||||| | | || | | ||| ||| || || ||||| | ||||| Sbjct 47232 CTCAAATTCATCACCCCAGACTTCATACAAACCT-CTGCACTCGTCAGGGCACATGAGAG 47290 Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 ||| | || ||||||| || ||||| || | || |||||||| || || ||| Sbjct 47291 TCCAATTTTCATTAGCCTCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGCATAGA 47350 Query 114834 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893 ||||||| | | || || | || || || |||| ||||| | | | Sbjct 47351 AGAGATCTCTTGCTCTCAAATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAA 47410 Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCCCT--TACGACGACCAG 114950 |||||||| ||||| || |||| || | || | | |||||| | || ||| Sbjct 47411 ATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCACCCC 47470 Query 114951 CCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAG 115010 |||| | |||||| | || || | ||||| | || | |||||||| ||||||| || Sbjct 47471 CCTGATCAACATACTTGGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAG 47530 Query 115011 ATTGGCCATTTGTCCCCCGAATA 115033 | || |||||||| ||||||||| Sbjct 47531 ACTGTCCATTTGTACCCCGAATA 47553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353532797720