Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 3e-15 >seq5 Length=831028 Score = 96.9 bits (106), Expect = 3e-15 Identities = 263/398 (66%), Gaps = 10/398 (3%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 ||||| |||||||| ||||| || || | | | || || | | ||||||||| Sbjct 47699 CCACAAATGTCTTCCTGTTTTTTGTTGGATATGCAAGATGATTCTCTTGCAGGAATTTTC 47640 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | || | | | ||||| |||| |||| || || ||||| || | | Sbjct 47639 AATACACTGACGCAGTGTGCCTTCATCAGCAAATCAGCTGGTGGAATAGGCCTTGCAATT 47580 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 ||| | ||||||| || ||||| || || || ||||| ||||| || || || | Sbjct 47579 CACAAAATACGTGCGAGTGGTTCATATATTCGGGGTACAAATGGACAGTCTAATGGTATT 47520 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||| | || |||| |||| | || || || || ||||| ||||| | Sbjct 47519 GTTCCAATGTTGCGTATCTTTAACACAACCGCCAAGTATGTTGATCAGGGGGGTGGTAAA 47460 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGC--AGGCTTTCA 94225 || | |||||| || || | ||| | ||||| ||||| ||||| | | | | | Sbjct 47459 AGAAGGGGTTCGTTTGCCATATATTTGGAGCCATGGCATGCGGATATATTTAAGATGT-- 47402 Query 94226 TCGACCTGCGAAAGAACCACGG--CA-ACGATCTGGAGAGGGCCAGAGACCTCTTCTACG 94282 | || ||||| || |||||||| || | ||| || || || ||||| |||||||| | Sbjct 47401 TGGATCTGCGCAAAAACCACGGTGCAGAGGATTTG---AGAGCAAGAGATCTCTTCTATG 47345 Query 94283 CTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || ||| | || || | |||||||||||||| ||| Sbjct 47344 CGCTATGGATCCCTGATTTGTTTATGAAACGCGTTGAG 47307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723144343640