Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=1844256 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||||||||||||||||||| | ||| || |||||| |||||||| |||| | Sbjct 534807 CTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAA 534748 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATT 138541 || | | ||||||||| ||||| ||||| || ||||| ||| | |||| || | | Sbjct 534747 AATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTC-TTGAATCTTTGCCTTGACAT 534689 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | |||||| | | ||| ||||| | || | || || ||||| ||||| |||| Sbjct 534688 TCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTA 534629 Query 138602 CAAAAATCTGCAT 138614 ||||||| ||||| Sbjct 534628 CAAAAATTTGCAT 534616 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||||||||||||| || || | |||||| |||||| ||||| ||||| | | | Sbjct 1772170 CTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAA 1772111 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATT 138541 || | | ||| ||||| ||||| || || |||||||| ||| | || | || | | Sbjct 1772110 AATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTC-CTGAATCTTGGCCTTGACAT 1772052 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 ||| | |||||| | | ||| ||||| | || | || || ||||| ||||| |||| Sbjct 1772051 TTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTA 1771992 Query 138602 CAAAAATCTGCAT 138614 ||||||| ||||| Sbjct 1771991 CAAAAATTTGCAT 1771979 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||||||||||||||| || || ||||| |||||| ||||| ||||| | | | Sbjct 535035 CTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAA 534976 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATT 138541 || | |||||| || ||||| || || || || ||||| ||| | |||| || | | Sbjct 534975 AATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTC-TTGAATCTTTGCCTTGACAT 534917 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | ||||| | | || || || | || | || || ||||| ||||| |||| Sbjct 534916 TCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTA 534857 Query 138602 CAAAAATCTGCAT 138614 ||||||| ||||| Sbjct 534856 CAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262344170480