Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 >seq2 Length=1844256 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| || | ||| || ||||| || || ||||| |||||||| || | Sbjct 534842 CCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAG 534783 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||||||||| ||| | ||||| | ||||||||| || Sbjct 534782 AGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGG 534723 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || |||||||| ||| ||||| || ||| | || || || ||||| || || Sbjct 534722 ATACCCTCCTTGTCTTGAATCTTTGCCTTG-ACATTCTCAATCGTGTCGCTGGGCTCGAC 534664 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || ||||| |||||||||||||||||||| Sbjct 534663 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATT 534613 Score = 125 bits (138), Expect = 5e-24 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| || | ||| || ||||| ||| || ||||| ||||||||||| | Sbjct 535070 CCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCA--G 535013 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || |||| || | ||| || ||||| | ||||||||||| || || | Sbjct 535012 ACAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGG 534953 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| || |||||||| ||| ||||| || ||| | || || || || ||| ||| Sbjct 534952 GAATGCCCTCCTTGTCTTGAATCTTTGCCTTG-ACATTCTCAATTGTGTCACTAGGTTCA 534894 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | |||||||| || || || ||||| |||||||||||||||||| Sbjct 534893 ACTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATA 534843 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| || | ||| || ||||| ||| || ||||| ||||| ||||| | Sbjct 1772205 CCACCACGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAG 1772146 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||| || ||||| | ||||| | ||| ||||| ||| Sbjct 1772145 AGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGA 1772086 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| ||| ||| || ||| |||| || || ||||| || || Sbjct 1772085 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACC 1772026 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || ||||| ||||||||||||||||| || Sbjct 1772025 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTT 1771976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391960798565