Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=1844256 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | ||||| || ||||| ||||| |||||||| || || Sbjct 534998 TCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTG 534939 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| ||| |||| || | ||||| || || ||||| ||||||| Sbjct 534938 TCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATG 534879 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||| ||||||||||||||||| Sbjct 534878 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 |||||||| || |||||||| || || | || |||| ||| || || || | Sbjct 1772169 TCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAA 1772110 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| | |||||||| || |||||||| ||||| || ||||| || |||| | Sbjct 1772109 ATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTT 1772050 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||| | |||||| || || || | || ||||| || ||||| |||||| Sbjct 1772049 TCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACA 1771990 Query 45330 AAAATTTGCATC 45341 |||||||||||| Sbjct 1771989 AAAATTTGCATC 1771978 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| |||||| || ||| | ||||| | || ||||| || || || || || || Sbjct 534770 TCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTG 534711 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| ||| |||| || | |||||| | |||||| || || || | Sbjct 534710 TCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATG 534651 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||| ||||||||||||||||| Sbjct 534650 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003149149640