Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 181 1e-40 >seq5 Length=831028 Score = 181 bits (200), Expect = 1e-40 Identities = 927/1460 (63%), Gaps = 40/1460 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || || || |||| || || ||||| |||| ||||| |||| | ||||| | | Sbjct 46111 CGTAGATAATACACACCTGTTTTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTC 46170 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||| || |||||| ||||||| | | || | || || ||||| || ||| Sbjct 46171 AGTTTGCTGAATGTTGGTTGTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAG 46230 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||| | |||||| |||||||| || | ||| ||| |||||||| || ||| || Sbjct 46231 ATTCCTCTATCCGCAGCCATATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTG 46290 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACC---TGCC 115794 || | | ||| || | |||||| || | |||| | | |||||| ||| Sbjct 46291 TACAATTCCTTTATGTGTGGTGGGATTTCTTCAATATGTCTCAAAGAGCCGTTGTATGCA 46350 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | | | | | ||||||| || |||||| |||| | | || | | Sbjct 46351 ATAAGCTTTTG---CTTCATAGTCTCGTTCCAGAGTCCAAGATCGACCAAGTCATTGAGC 46407 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 | || ||| ||||||| || ||||| | ||||| ||||||||| | Sbjct 46408 AAATGTGGATTAACAACAAAGAATTCACCGCTCAATACACGTCTGTAATAGATGTTACTA 46467 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 || |||||||| || | ||||| || ||||| || || | || ||||| || ||||| Sbjct 46468 GTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATA 46527 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || |||| || | ||| | | ||| | || | | |||| ||||| ||| Sbjct 46528 GGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTCATTCTTGCCTTAAGGGCATCC 46587 Query 116035 CAGTCGTAGTTGAGCTTTGTCTCCCCCT------CCCACATATCAAACTGGAGGATACCT 116088 ||||| | ||||| | || | |||| | ||| ||||| | | |||| Sbjct 46588 CAGTCCCAA---AGCTTGTTATCAACAGTAGCACCCCAAAGATCGAACTGCAAAAGACCT 46644 Query 116089 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 116148 || || || ||||| || | ||| ||||| | || | || ||||| ||| Sbjct 46645 TGAGAAGCAGGCGAACCTGGATATGAGTCATAATGACCATACTTTTCGGCCAAA---GAG 46701 Query 116149 CTCGCCTCG---AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205 | | ||| || || | ||| || || ||||| || || |||| || || Sbjct 46702 ATAGACTCATCCAGACACGCATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTG 46761 Query 116206 GCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGACCTTGGAC 116264 || || || || ||||| | || | ||| ||| || || ||| || | |||||| || Sbjct 46762 GCTTCATCAGATTCAAATG-GATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAAC 46820 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324 || | ||||| || | || | | ||| || | | ||| || ||| || || | Sbjct 46821 TCCAACACCAATAGGCCTGTGACGGAAATTTGAATACCTAGCTTCCTTCACTGGGTAGTA 46880 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384 || ||||| || | || | ||| | || | || || ||| | | |||||| Sbjct 46881 GTTTCTATCAATGATTTGGTTCAAATTGTATGTAATGACACGTGAGATCTTGTAAAGCTT 46940 Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 | | |||||||| | ||| | ||| ||| || |||| | |||||||| |||| Sbjct 46941 CTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAA 47000 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 ||||| |||| || | ||||||| |||| || |||||| ||||| || || Sbjct 47001 GTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGA 47060 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 | || ||||| |||| |||||||| || || |||| ||| || ||||||||||| || Sbjct 47061 AGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAG 47120 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTT--GAGAATAGCCTTCCATACATCGGCG 116622 |||||| ||||| || || || ||| ||||| | || || ||||| | Sbjct 47121 CATATACGGCGTACCAGTTTCAATTT--GACTTTGTAAGATTGCAAACCATAACTTTTGT 47178 Query 116623 GCTGGCACAGTGGCGTT--GGCTC-GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCA 116679 || || | ||| || ||| | || | | || ||||| ||||| || |||||| Sbjct 47179 GCGGGGA---TGGTCTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCCTCA 47235 Query 116680 AACTCTTCACCCACAG-CCTCTGAGAGCCCTGGTGC-CTTATCTGGACAGAAGAGAGACC 116737 || || |||||| ||| | || | | ||| ||| || || || || | ||||| || Sbjct 47236 AATTCATCACCC-CAGACTTCATACAAACCT-CTGCACTCGTCAGGGCACATGAGAGTCC 47293 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | || ||||||| || ||||| || | || |||||||| ||||| |||||| Sbjct 47294 AATTTTCATTAGCCTCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGCATAGAAGA 47353 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 |||| | | || || | || || || |||| ||||| | | | | Sbjct 47354 GATCTCTTGCTCTCAAATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATA 47413 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCCCT--TGCGACGACCAGCCT 116914 ||||||| ||||| || |||| || | || | | |||||| | || ||| ||| Sbjct 47414 TATCCGCATGCCATGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCACCCCCCT 47473 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 | | |||||| | || |||| |||||| | || | |||||||| ||||||| ||| | Sbjct 47474 GATCAACATACTTGGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACT 47533 Query 116975 GGCCATTTGTCCCCCGAATA 116994 | |||||||| ||||||||| Sbjct 47534 GTCCATTTGTACCCCGAATA 47553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507130980440