Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 113 1e-19 >seq2 Length=1844256 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || | ||| ||||| ||||||||| | |||||| |||| ||| || | ||| Sbjct 535058 CTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCG 534999 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || ||||| ||||| || || || || | ||||||||| ||||| ||| || || Sbjct 534998 TCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTG 534939 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || ||||||||| ||| || || | ||||| | | ||| || || | || || Sbjct 534938 TCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATG 534879 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || |||||||| || ||||||||||| Sbjct 534878 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTG 534847 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || | ||| ||||| ||||||||| | ||| || || | | ||| | || Sbjct 1772193 CTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCG 1772134 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || ||||| ||||| || || || || | | ||||||||| ||| ||| || ||| Sbjct 1772133 TCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTG 1772074 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||||||||| ||| || ||| | ||||| | | || || || | ||||| Sbjct 1772073 TCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATG 1772014 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || |||||||| || ||||||||||| Sbjct 1772013 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTG 1771982 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || | ||| ||||| ||||||||| | ||||||||| | | ||| | || Sbjct 534830 CTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCG 534771 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || ||||| || || |||||||| || | | ||| ||||| ||| || || || Sbjct 534770 TCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTG 534711 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || ||||||||| ||| || || | ||||| | | || || || | ||||| Sbjct 534710 TCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATG 534651 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || |||||||| || ||||||||||| Sbjct 534650 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTG 534619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921464055603