Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 132 5e-26 >seq2 Length=1844256 Score = 132 bits (146), Expect = 5e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || ||||||||||| || |||||||| || |||||||| |||| || || || |||||| Sbjct 534812 GTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTCCAGTTGTTTGCCG 534753 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| | ||| ||||| | || | | ||||||||| ||||| |||| Sbjct 534752 GCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTG 534693 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | || | | ||||||||| | || || || | |||||||| ||||| || || || Sbjct 534692 ACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTC 534633 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || ||||| |||||||| ||| Sbjct 534632 TTTACAAAAATTTGCATATTG 534612 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 |||||||||||||| || || || || || ||||| || |||| || || ||||| || Sbjct 1772175 GTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCCAGTTGCTTACCA 1772116 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || ||||| | ||||||||| | || | || ||| |||||| ||||| |||| Sbjct 1772115 GCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTG 1772056 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||||| | || || || | |||||||| ||||| || || || Sbjct 1772055 ACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTC 1771996 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || ||||| |||||||| ||| Sbjct 1771995 TTTACAAAAATTTGCATCTTG 1771975 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 |||||||||||||| || ||||| || || | || || |||| || || ||||| || Sbjct 535040 GTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCCAGTTGCTTACCA 534981 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || ||||| |||||||| || | || | || ||||||||| ||||| |||| Sbjct 534980 GCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTG 534921 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | || | | ||||| || | ||| || || | || ||||| ||||| || || || Sbjct 534920 ACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTGCCAGTGAGAGTC 534861 Query 46577 TTAACAAAGATTTGCAT 46593 || ||||| |||||||| Sbjct 534860 TTTACAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238336410680