Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=1844256 Score = 143 bits (158), Expect = 3e-29 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| || ||||| || ||||| ||||| ||||||||| | || |||||| || Sbjct 534613 AATATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 534672 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | || || | | || | ||| || | ||||| ||||| || || | || Sbjct 534673 AGCGACACGATTGAGAATG-TCAAGGCAAAGATTCAAGACAAGGAGGGTATCCCTCCAGA 534731 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||| || | |||| ||| |||||||| ||||| |||| ||||| ||| ||||| Sbjct 534732 CCAACAGAGGTTGATTTTCGCCGGCAAACAACTGGAGGACGGTCGCACTCTCTCAGACTA 534791 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 |||||| |||||||| ||| || || || ||||| || Sbjct 534792 CAACATTCAAAAGGAGAGC-ACTCTTCACTTGGTTCT 534827 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| || ||||| || ||||| ||||| ||||||||| | || |||||| || Sbjct 1771976 AAGATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 1772035 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||||| | ||| | || | || || | ||||||||||| ||||| | ||| Sbjct 1772036 AGCGACACAATTGAAAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGAC 1772095 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | |||| || || || || ||||| |||| || || ||| || || Sbjct 1772096 CAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAGGACGGTCGTACTCTCTCGGATTAT 1772155 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| |||||||| || || || ||||| || Sbjct 1772156 AACATTCAAAAGGAGAGTACTCTTCACTTGGTTCT 1772190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172743730560