Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 199 2e-45 seq2 116 1e-20 seq3 114 5e-20 >seq1 Length=3278253 Score = 199 bits (220), Expect = 2e-45 Identities = 469/699 (67%), Gaps = 12/699 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| |||||| | || ||||| | |||||||| | ||| || | || ||| Sbjct 217570 GCTATTGGTATTGATTTGGGTACCACGTACTCATGTGTCGCTGTATATAAGGATAACAAT 217629 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || || || ||||||||||||| ||||| || ||||| | || || || Sbjct 217630 GTTGAGATCATTCCAAATGACCAAGGTAATCGAACAACGCCTTCTTATGTTGCCTTCACT 217689 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCCAAAA 451091 || | || | || | || | || || ||| |||| | | || | ||| Sbjct 217690 GACACTGAGCGTCTGATTGGTGATGCCGCCAAAAATCAAGAGGCGCGT--AACCCAGAAA 217747 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| | | |||||||| | || |||||| | | || ||||||| | ||||||||| Sbjct 217748 ACACTATTTTCGATGCTAAGAGGTTGATTGGCAGAAAGTTTGATGATAAAACTGTACAAG 217807 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAAT---CAAAAAGGAAAGCCCTATATTC 451208 | || | || || | | | || ||| | || |||||||| ||||| Sbjct 217808 ATGATATGAAGCACTGGCCATTCAAGGTTACCAATGGCCCAAGCGGAAAGCCTAATATTG 217867 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 |||| | | | ||| ||| || || || | ||||| || || |||||||| Sbjct 217868 AAGTTACCTTCCAGGGTCAAAAGAAGACATTCCACGCCGAAGAGATCTCCAGTATGGTTC 217927 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 ||| ||||||||| || | || ||| ||| | ||| | | | ||||| || | Sbjct 217928 TTATTAAAATGAAGGAGATTGCTGAAGCATACTTGGGTAAGACGATCAAGGATGCTGTCA 217987 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACAT 451387 ||||||| ||||| |||||||||||| | ||||| ||||| || || ||||| || ||| Sbjct 217988 TTACTGTCCCCGCCTATTTCAATGATTCCCAACGTCAAGCTACCAAGGATGCTGGTACA- 218046 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||| || || |||||| | |||||||||||||||| || ||||||||| | || ||| Sbjct 218047 ATTGCCGGGTTGAATGTTATGAGAATTATTAATGAACCCACCGCAGCTGCTATCGCCTAT 218106 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || | ||| || || || | || || ||| |||| | || ||| | ||||| Sbjct 218107 GG-TTTGGATAA-GAAGAGCGGC-TCTGAGAAGAATGTTTTGATTTTCGATCTCGGTGGT 218163 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 ||||| |||| | | | || ||||||||||||| | ||||| || ||||| ||| Sbjct 218164 GGAACCTTTGATGTTAGTATTCTGACAATTGAAGATGGTATTTTTGAGGTTAAGGCTACC 218223 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||||||| || | ||||| || || |||| ||| Sbjct 218224 GCTGGTGATACCCACTTGGGAGGCGAGGACTTTGACAAT 218262 Score = 140 bits (154), Expect = 1e-27 Identities = 200/282 (71%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || || |||||||||||| ||||||| || || ||||| ||||| Sbjct 1660510 GCTGTCATCACTGTCCCTGCCTATTTCAATGATTCACAACGTCAGGCTACTAAGGATGCT 1660451 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| | || ||||| || |||| || ||||||| ||||| || || || || |||||| Sbjct 1660450 GGAAAAATCGCTGGCCTAGATGTACTCAGAATTATCAATGAGCCCACTGCCGCAGCTCTA 1660391 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTT 451500 || | |||||| | | ||||| || | ||| | || ||||| ||||| Sbjct 1660390 GCTTTTGGACTTG----------ACAAACACGATGGAAAGACAATCGCAGTATACGATTT 1660341 Query 451501 TGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 ||||| || || ||||| ||| || | || | || ||||||||||| || Sbjct 1660340 GGGTGGTGGTACATTTGATATTTCGGTTTTGGAGATCCTCGGCGGTGTATTTGAAGTCAA 1660281 Query 451561 GGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 ||| |||||||| |||| ||| |||||||||||| |||| Sbjct 1660280 GGCTACCAATGGCAATACCTCTCTTGGAGGTGAAGATTTTGA 1660239 Score = 125 bits (138), Expect = 3e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 437595 AAGTTGAATGAAACAACAAGGTGTCGTATAATTGGCTTAACACTTGAAACACGACCTGAT 437654 ||||| ||||||||| ||| ||||| || || |||||||| || |||||||| || ||| Sbjct 214825 AAGTTAAATGAAACAGCAACATGTCGCATCATAGGCTTAACGCTGGAAACACGTCCAGAT 214766 Query 437655 TTTATTACTCCGAAAGAAATTACAATTCTTCGAAGTTATGGATGTACCAGAGTACAACTT 437714 ||||||||| |||||||| || ||||| | | |||||||||||||| ||| | Sbjct 214765 CGCATTACTCCGCAAGAAATTGAAAACCTTCGTACCTTGGGATGTACCAGAGTGCAATTG 214706 Query 437715 GGAATTCAACATATCAATGATGATATTTTGAATTACATTAATCGAGG 437761 || |||||||||| ||| | | |||| ||||| ||||| |||| Sbjct 214705 GGCATTCAACATACAAATAACAGTGTTTTAGATTACGTTAATAGAGG 214659 >seq2 Length=1844256 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || ||||| || || ||||||||||| |||||| | | Sbjct 534844 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATTACTCTTGAAGTTGAACCTAGT 534903 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || ||| |||||||| ||||| || ||||| || ||||| Sbjct 534904 GACACAATTGAGAATGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAG 534963 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| ||||| | || || ||||| || || ||| | || ||| | ||||| || Sbjct 534964 CAGCGTTTGATTTTTGCTGGTAAGCAACTGGAGGACGGACGTACATTGTCTGATTACAAC 535023 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| || |||||||| || Sbjct 535024 ATTCAAAAGGAGAGTACTCTTCACTTGGT 535052 >seq3 Length=2150608 Score = 114 bits (126), Expect = 5e-20 Identities = 196/282 (70%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||| | || ||||| || || ||||| |||||| | ||||| || || ||||| ||||| Sbjct 1735396 GCAATTATCACTGTCCCTGCCTATTTTAATGATTCTCAACGTCAGGCTACTAAGGATGCT 1735337 Query 451382 GG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || ||| ||||| ||||| |||| |||| ||||| ||||| || || || || ||| | Sbjct 1735336 GGTACA-ATTGCCGGTTTGGATGTGGTTCGTATTATCAATGAGCCAACTGCTGCCGCTAT 1735278 Query 451441 AGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTT 451500 || ||||| | | || | || | | ||| || |||||||| | ||||| Sbjct 1735277 TGCCTATGGTATTGACAAGGCCAATGTA------GAATCGAACATTTTAGTGTACGATTT 1735224 Query 451501 TGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 ||||| || || |||| |||| | |||| | || ||| || |||||||| Sbjct 1735223 AGGTGGTGGTACCTTTGATGTTTCTTTGCTTTTGTTAGACTCTGGCGTTTTTGAAGTCGT 1735164 Query 451561 GGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 | ||| |||||| |||||| | ||||||||||| |||| Sbjct 1735163 TGGAACTGGTGGTGACACTCATTTGGGAGGTGAAGACTTTGA 1735122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718172174972