Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 428 3e-114 seq3 109 4e-18 >seq1 Length=3278253 Score = 428 bits (474), Expect = 3e-114 Identities = 1063/1588 (67%), Gaps = 54/1588 (3%) Strand=Plus/Minus Query 517155 ATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTAT 517214 ||| || |||||| | ||| | ||||||| | | || |||||||| || || Sbjct 219133 ATTTTTCAGCTTCCTGGACCATACGGTCAATTTCTTGCTGTGATAATCTTCCCTTATCAT 219074 Query 517215 TAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAA 517274 |||| || || | || || ||||| || || ||||| ||||| || || | || Sbjct 219073 TAGTGATCGTGACATGCTCCGATTTTCCGGTGGACTTATCCATAGCAGTGACGTTCAAAA 219014 Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 | ||||| ||||| | ||||||||||||||||||||| ||||| || | | || || | Sbjct 219013 TTCCATTAGCATCAATATCAAATGTGACTTCAATTTGTGGGACACCACGAGGTGCCGGAG 218954 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 || || ||| | ||| | || ||| ||||||||| || || | | ||||| Sbjct 218953 CAATGCCACTCAAGTGGAATTTACCAAGAAGATTATTATCCTTGGTCATAGCCCTTTCAC 218894 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 | || |||| ||||||| ||| | ||||| |||| | || || |||| |||| Sbjct 218893 CTTCAAAAACTTGGATAAGGACTCCTTCTTGATGATCTTCGTTGGTCGTGAATA-TCTGA 218835 Query 517455 ATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 |||| || ||||||||| ||||| | | |||| | ||||||| |||||| || Sbjct 218834 TTTTTCTTTGTAGGAATTGTGGTGTTACGCTTGATAAGAACAGTCATAACACCACCAGCA 218775 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 ||||| |||||||| || | || | ||||| | | |||| | || | ||||| Sbjct 218774 GTTTCCAAACCAAGGGATAATGGTGCAACATCCAACA--ACAAAAGTTCCTGGATTTTC- 218718 Query 517574 TCAGTTTG---ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 |||| || |||| |||||||| ||||| | |||||| ||||| || ||||| ||| Sbjct 218717 TCAGACTGGTTACCAGACAGAATAGCAGCTTGTACAGCAGCGCCATAAGCTACAGCCTCA 218658 Query 517631 TCAGGATTAACAGTTTCATTTA--GTTTTTTACCATTGAAAAAA---TTTGAAAGAAGTT 517685 || || || | || | | | ||| ||||||||| || || ||| | |||| Sbjct 218657 TCTGGGTTGATAGA--CCTGCACGGTTCTTTACCATTAAAGAAGCCCTTT---ATGAGTT 218603 Query 517686 GTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 517745 || | ||| ||||| | | || || ||||| || |||| |||||| | || | | Sbjct 218602 GTTGAATCTTGGGAATCCTGGTGGAACCACCAACCAAAACAACTTCATGTATCTTTCTCT 218543 Query 517746 TATCCAGTT---TTGAATCCAATAAAACTTTTTCAACGGGTTC-AAGACCCGCTCTAAAC 517801 | || || | || ||||| | ||||| || || | ||| | ||| || Sbjct 218542 TGTCAAGACCACTAGATTCCAAGG---CCTTTTCTACAGGAACCAAGGTACT-TCTGAAT 218487 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 517861 || ||| | ||||| || || ||| ||| || || |||||||| || Sbjct 218486 TTCTCGTTACACAACTCTTCAAAGCGGGCCCTACTAATGGTAGTGTTGTAATCAATACCC 218427 Query 517862 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 517921 || ||| ||||| | ||||| |||| ||| || ||| || || |||| || || Sbjct 218426 TCATACAGGGAATCCAACTCAATAGTAGCTTGTGTAGAACTTGAAAGAACACGCTTTGCC 218367 Query 517922 CGTTCACATGCTGTCCTTA---GTCTTCGTA-AGGCTT--TTGCTGATTGATTCAAATCT 517975 | ||| || |||||| | | || || | |||| ||| |||| |||| | | Sbjct 218366 CTTTCGCAATGTGTCCTCAAACGCCTCAGTGCACGCTTGTTTGTTGATAGATTTTTACCA 218307 Query 517976 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTATCAAAAT 518033 |||| | | | |||| || ||||| ||||| || | | |||| ||||| | Sbjct 218306 ---TTATTTAGACGCATGAAGTCACGGACACA--ATGTTCCACCAAAAGATTGTCAAAGT 218252 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 | || |||||||| | |||| || | ||||| | || | |||| |||||||||| Sbjct 218251 CCTCGCCTCCCAAGTGGGTATCACCAGCGGTAGCCTTAACCTCAAAAATACCATCTTCAA 218192 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | || || | | |||||| |||||||||||| | ||| ||||| | |||||| | | Sbjct 218191 TTGTCAGAATACTAACATCAAAGGTTCCACCACCGAGATCGAAAATCAAAACATTCTTCT 218132 Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 | | | || ||||| | |||||| || | |||||| || || ||||||||||||| Sbjct 218131 CAGAGCCGCTCTTCTTATCCAAACCATAGGCGATAGCAGCTGCGGTGGGTTCATTAATAA 218072 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 |||||| |||||| | || |||||| | || ||||| || || ||||| | ||| |||| Sbjct 218071 TTCTCATAACATTCAACCCGGCAATTGTACCAGCATCCTTGGTAGCTTGACGTTGGGAAT 218012 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTTACCAA-TATAAGC 518331 | || ||||| || || |||||||| || ||||| | | | |||| |||| ||| Sbjct 218011 CATTGAAATAGGCGGGGACAGTAATGACAGCATCCTTGATCGTCTTACCCAAGTAT---- 217956 Query 518332 GCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC--TGGGGAAT 518387 |||| || | | ||||||||| | | || ||| || || | ||| | ||||| Sbjct 217955 GCTTCAGCAATCTCCTTCATTTTAATAAGAACCATACTGGAGATCTCTTCGGCGTGGAAT 217896 Query 518388 ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAA 518444 | ||| || | || | | ||||||| || || || | |||| Sbjct 217895 GT--CTTCTTTTGACCCTGGAAGGTAACTTCAATATTAGGCTTTCCGCTTGGGCCATTGG 217838 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 |||| || |||||||||| |||||||| ||| ||| ||| |||| ||| | ||| | Sbjct 217837 TAACCTTGAATGGCCAGTGCTTCATATCATCTTGTACAGTTTTATCATCAAACTTTCTGC 217778 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 |||| || | || ||||| |||||||| || ||| ||| || |||||| ||||| Sbjct 217777 CAATCAACCTCTTAGCATCGAAAATAGTGTTTTCTGGGTTACGCGCCTCTTGATTTTTGG 217718 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 | ||||| ||||||||| | || || || || || | |||||| || || ||||| |||| Sbjct 217717 CGGCATCACCAATCAGACGCTCAGTGTCAGTGAAGGCAACATAAGAAGGCGTTGTTCGAT 217658 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 518684 ||||||| ||||| | ||| || ||||| || || | ||||| | ||||| Sbjct 217657 TACCTTGGTCATTTGGAATGATCTCAACATTGTTATCCTTATATACAGCGACACATGAGT 217598 Query 518685 AAGTTGTTCCTAAATCAATACCAATAGC 518712 | || || || ||||||||||||||||| Sbjct 217597 ACGTGGTACCCAAATCAATACCAATAGC 217570 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||| |||||||| ||||||||||| | | || | || | | Sbjct 791071 TGTACACTTATATTGACCGAGGGAGACTCAGCTAAAACTTCTTGTTTGGCAGGGTTATCT 791012 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 ||| ||||||||||| | ||||||||||| ||||| | ||||| | ||||||||||| Sbjct 791011 GTTGTTGGAAGAGATAAATATGGAGTTTTTCCACTCAAGGGAAAGTTGTTGAATGTTAGA 790952 Query 635561 GATGCT 635566 |||||| Sbjct 790951 GATGCT 790946 >seq3 Length=2150608 Score = 109 bits (120), Expect = 4e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| ||| ||||||||||| ||||| ||||| | | |||| Sbjct 1735260 TTGTCAATACCATAGGCAATAGCGGCAGCAGTTGGCTCATTGATAATACGAACCACATCC 1735319 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | ||| |||||| | || ||||| ||||| || || | ||| ||||| |||||||| ||| Sbjct 1735320 AAACCGGCAATTGTACCAGCATCCTTAGTAGCCTGACGTTGAGAATCATTAAAATAGGCA 1735379 Query 518288 GGAACAGTAATAA 518300 || ||||| |||| Sbjct 1735380 GGGACAGTGATAA 1735392 Score = 96.9 bits (106), Expect = 3e-14 Identities = 262/396 (66%), Gaps = 19/396 (5%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| |||||| ||| | ||||||||||| | ||| | | || ||||| || ||| Sbjct 1734357 TTTTCATGGGCAGTAACACTTAGAATACCATTAGTATCGACGTTGAAGGTGACCTCGATT 1734416 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || || ||||| | || ||||| || ||| ||| | ||| |||| || | | Sbjct 1734417 TGTGGAGTTCCTCTGGGTGCTGGTGGTATTCCTGTCAAGTCAAACTTTCCAAGGTGGGTG 1734476 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || || || | || | ||| || | ||| | || |||||||| ||||| || Sbjct 1734477 TTGTCCTTTGTCAGCTTCCTTTCTCCTTGGAAGACATGAATAGTAACGGTGGTTTGGTTG 1734536 Query 517430 TCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 517488 || | | || | |||| |||| ||||| || ||| || | || || || ||||| Sbjct 1734537 TCGGTGGATGTGGAGAATA-TCTGTGATTTGTTGGCAGGGATCATGGTATTCCTTTCAAT 1734595 Query 517489 AATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 517548 |||| | |||||| ||||| |||||| | ||||||||| | || ||||| | Sbjct 1734596 AATAACAGACATAATTCCACCCAATGTTTCGATACCAAGAGACAATGGGCACACATCCAG 1734655 Query 517549 TAGGACAATA----TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAA 517604 || ||||| || || | || || |||| ||| ||| || | || | Sbjct 1734656 AAG--CAATAAGTCTTGGGAGGATTCTC--CAGT-----CAA----TATACCTCCCTGCA 1734702 Query 517605 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAA 517640 | || || ||||| |||||||||||||| | ||||| Sbjct 1734703 TGGCGGCGCCATAAGCAACAGCTTCATCCGCATTAA 1734738 Score = 86.0 bits (94), Expect = 5e-11 Identities = 222/333 (67%), Gaps = 24/333 (7%) Strand=Plus/Plus Query 322054 ATCAATT--AGAATATGATTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTA 322111 ||||||| | || ||| | ||||| | |||||| ||||| ||||||||||| || Sbjct 1735089 ATCAATTTAACAAAATGGTCCATTACTCTACGGTCAAAGTCTTCACCTCCCAAATGAGTG 1735148 Query 322112 TTACCACCTACTGCTAATG--TTCTAAATACTCCA---TTTGAGATATTCATTAACGAAA 322166 | |||||| | | | || | ||| ||| || ||| | | | | | || | |||| Sbjct 1735149 TCACCACC-AGTTCCAACGACTTCAAAA-ACGCCAGAGTCTAACAAAAGCA---AAGAAA 1735203 Query 322167 CATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttATTCC 322226 |||| || || ||| | ||||| || || || | | ||| | || | ||| Sbjct 1735204 CATCAAAGGTACCACCACCTAAATCGTACACTAAAATGTTC------GATTCTACATTGG 1735257 Query 322227 ATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAA 322286 || ||| | ||| || |||| ||| || |||||||| ||||| || || || Sbjct 1735258 CCTTGTCAAT------ACCATAGGCAATAGCGGCAGCAGTTGGCTCATTGATAATACGAA 1735311 Query 322287 GAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAA 322346 ||||| ||||| |||||| || ||| ||| ||| || || | || | ||||||| Sbjct 1735312 CCACATCCAAACCGGCAATTGTACCAGCATCCTTAGTAGCCTGACGTTGAGAATCATTAA 1735371 Query 322347 AATATGCTGGTACAGTAATAACTGCTTTATTAA 322379 |||| || || ||||| |||| ||| || |||| Sbjct 1735372 AATAGGCAGGGACAGTGATAATTGCCTTCTTAA 1735404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821953390354