Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 230 3e-55 >seq5 Length=831028 Score = 230 bits (254), Expect = 3e-55 Identities = 938/1465 (64%), Gaps = 50/1465 (3%) Strand=Plus/Minus Query 111896 TATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGC 111955 |||| | ||||||||||| || || |||||||| |||||||| | || | |||||| | Sbjct 47553 TATTCGGGGTACAAATGGACAGTCTAATGGTATTGTTCCAATGTTGCGTATCTTTAACAC 47494 Query 111956 CACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCT 112012 || || ||||| | || | || || | | ||| || | || | ||| | Sbjct 47493 AACCGCCAAGTATGTTGATCAGGGGGGTGGTAAAAGAAGGGGTTCGTTTGCCATATATTT 47434 Query 112013 TGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGA 112072 ||||||||||| |||||||| | || | | || |||| ||||| |||| || Sbjct 47433 GGAGCCATGGCATGCGGATATATTTAAGATGTTGGATCTGCGCAAAAACCACGGTGCAGA 47374 Query 112073 GGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 112132 ||| | | | |||||||||| || || ||||| || ||| | || ||||| | Sbjct 47373 GGATTTGAGAGCAAGAGATCTCTTCTATGCGCTATGGATCCCTGATTTGTTTATGAAACG 47314 Query 112133 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAG-GCACCCGGTCTCTCCG 112191 ||||||| | || |||||| ||||| | || || ||| || ||| ||| | | | Sbjct 47313 CGTTGAGGCTAATGAAAATTGGACTCTCATGTGCCCTGACGAGTGCAGA-GGTTTGTATG 47255 Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | | | |||||| || ||||| || || ||||| ||||| || ||| || || Sbjct 47254 AAGTCTGGGGTGATGAATTTGAGGCTCTTTACACCAAGTATGAACAAGCTGGTTTGGGCC 47195 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 | ||| | || || | | ||| || || | | ||||| || |||| Sbjct 47194 GTAAGACCATCCCCGCACAAAAGTTATGGTTTGCAATCTTACAAAGTCAAATTGAAACTG 47135 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 |||| || |||||||||||||| || ||||| ||| ||| ||| ||||||||| ||| Sbjct 47134 GTACGCCGTATATGCTTTACAAGGATGCCTGCAACGCAAAATCTAACCAAAAGAATCTGG 47075 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGA---CAAAGATG 112428 || || || ||||||| | || ||||| | | | ||| || |||||| | Sbjct 47074 GTACCATAAAATCTTCCAACTTGTGCTGTGAAATTGTACAGTATACTGATAGCAAAGAAG 47015 Query 112429 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 112488 ||||| |||||| | || ||||||||| | || | || ||| || ||| | Sbjct 47014 TT---GCTGTCTGTAACTTGGCTTCAATCGCTTTACCTATGTTTGTTAATAAGGAGGAGA 46958 Query 112489 AGACATTTGATTATGAAAAACTCCAC--GAAGTTACGAAAACTGTCA---CAAAAAACCT 112543 |||| ||||||| | || || || || | ||| ||||| || | || | Sbjct 46957 AGACTTTTGATTTCAAGAAGCTTTACAAGATCTCACG-----TGTCATTACATACAATTT 46903 Query 112544 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 112603 ||| | | ||||||||||| | ||||| || || ||| | | || ||| | | Sbjct 46902 GAACCAAATCATTGATAGAAACTACTACCCAGTGAAGGAAGCTAGGTATTCAAATTTCCG 46843 Query 112604 ACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 112663 ||| | || |||||| | || || |||||| | || ||| ||||| | | ||| | Sbjct 46842 TCACAGGCCTATTGGTGTTGGAGTTCAAGGTTTAGCTGATACGTTCATGTTGTTGCGCTA 46783 Query 112664 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCA 112723 ||||||| || || ||||| | ||| | || |||||||||||| || || ||| | Sbjct 46782 TCCATTTGAATCTGATGAAGCCAGGGAGCTGAACAAGCGTATATTTGAAACTATTTATTA 46723 Query 112724 CGCCGCTCT---TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 112780 || ||| |||| | | || ||||| || |||||| ||||| | | Sbjct 46722 TGCGTGTCTGGATGAGTCTATCTC---TTTGGCCGAAAAGTATGGTCATTATGACTCATA 46666 Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG------AAGGTGA 112834 | ||||| || ||||| ||||| | | || || ||| | |||| | ||| Sbjct 46665 TCCAGGTTCGCCTGCTTCTCAAGGTCTTTTGCAGTTCGATCTTTGGGGTGCTACTGTTGA 46606 Query 112835 GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894 | ||||||| | |||||||| || || |||| | | || || | | ||| | | Sbjct 46605 TAACAAGCTT---TGGGACTGGGATGCCCTTAAGGCAAGAATGAAAAAACATGGTTTGAG 46549 Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 112954 ||| | | || |||| || ||||| || ||||| ||| | || || ||||| ||||| Sbjct 46548 AAACTCTTTATTCTTGGCTCCTATGCCTACTGCCTCTACCTCTCAGATTTTGGGAAATAA 46489 Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 113014 ||||| || || || || || | ||||||||| ||| | | || || || Sbjct 46488 TGAATCTTTCGAGCCATATACTAGTAACATCTATTACAGACGTGTATTGAGCGGTGAATT 46429 Query 113015 TGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA 113074 | |||| || ||| | | ||||| | || |||| |||||| | || Sbjct 46428 CTTTGTTGTTAATCCACATTTGCTCAATGACTTGGTCGATCTTGGACTCTGGAACGAGAC 46369 Query 113075 TATGAAG---GATCTCA-TGGTGAAAGCGGGTGGTTCCATTCA-AAATATTGTGGATATT 113129 ||||||| | || | || | | ||| | | || | | |||||| || || Sbjct 46368 TATGAAGCAAAAGCTTATTGCATACAACGGCT-----CTTTGAGACATATTGAAGAAATC 46314 Query 113130 CCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATT 113189 ||| | || ||| | |||||| |||||||||||||| ||| ||| |||| Sbjct 46313 CCACCACACATAAAGGAATTGTACAAAACAGTTTGGGAAATTAAGCAAAAGACAATCATA 46254 Query 113190 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCA 113247 || ||||| || ||| | || ||| || |||| |||| ||| | ||| | | || Sbjct 46253 GATATGGCTGCGGATAGAGGAATCTTTATAGATC--AGTCGCAGTCCCTCAATATTTACA 46196 Query 113248 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 113307 ||||| ||||| | ||| || | ||||||| | || | ||||| ||||| | Sbjct 46195 TGGAACAACCAACATTCAGCAAACTGACAAGTATGCACTTTTATGGATGGAAAAAGGGAC 46136 Query 113308 TCAAAACGGGGATGTATTACCTCCG 113332 ||||||| || ||||||| || || Sbjct 46135 TCAAAACAGGTGTGTATTATCTACG 46111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742330166480