Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 seq2 93.3 5e-14 >seq5 Length=831028 Score = 165 bits (182), Expect = 1e-35 Identities = 590/908 (65%), Gaps = 26/908 (3%) Strand=Plus/Plus Query 110246 AATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGC 110305 |||| || || ||| ||||||||| ||| | | || | ||| || || || | || | Sbjct 46946 AATCAAAAGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTAC 47005 Query 110306 ACACAGAAGTCTCGTCTTTG---TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAAC 110362 | |||| | | |||||| || || || | | |||||| |||||||||||| Sbjct 47006 AGACAGCAA---CTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAG 47062 Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422 || ||| ||||| ||||| || || ||||| | |||||| |||||||| || |||| Sbjct 47063 ATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCA 47122 Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAA--TGGCCTTCCATACATCGGCGGC 110480 | || || ||||||||||| | || |||| || | || ||||| | || Sbjct 47123 TATACGGCGTACCAGTTTCAATTTG--ACTTTGTAAGATTGCAAACCATAACTTTTGTGC 47180 Query 110481 GGGGACAGTTGCGTTAG--CGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAAT 110538 ||||| || | | | | | ||| | | || ||||||||||| | |||||||| Sbjct 47181 GGGGATGGT--CTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCCTCAAAT 47238 Query 110539 TCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTT 110598 || | || | || ||| | | ||| | || ||| || || | ||| | ||||||| Sbjct 47239 TCATCACCCCAGACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTT 47298 Query 110599 CCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCA 110658 || ||||||| | ||||| |||| ||||| ||||| | ||| |||| || || Sbjct 47299 TCATTAGCCTCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGCATAGAAGAGATCT 47358 Query 110659 CGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCC 110718 | | || || |||| ||||| ||| || ||||| | | | |||||| Sbjct 47359 CTTGCTCTCAAATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCC 47418 Query 110719 GAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC---GACGACCCGCCTGGTTA 110775 | |||||||| || | ||| | || | || ||| | | || |||| |||| | | Sbjct 47419 GCATGCCATGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCACCCCCCTGATCA 47478 Query 110776 ACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCA 110835 ||||| || || | || |||| | | ||| |||| ||| |||| || || ||| Sbjct 47479 ACATACTTGGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGTCCA 47538 Query 110836 TTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGC-ATACCAATAC 110893 |||||||||| ||| | || || | | ||||| || | ||| || ||| | || || | Sbjct 47539 TTTGTACCCCGAATATATGAAC-CACTCGCACGTATTTTGTGAAT-TGCAAGGCCTATTC 47596 Query 110894 CACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCG 110953 |||| || | || || || ||||||| || |||||| |||| || ||| | Sbjct 47597 CACCAGCTGATTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAG 47656 Query 110954 AATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCAT 111013 |||| | | | | | | ||| || |||||||| || || ||| ||||| |||| Sbjct 47657 AATCATCTTGCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCAT 47716 Query 111014 TGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGA 111073 | || || || || || || || | || | |||| ||| || |||||| || | Sbjct 47717 TAAATAGCGTTGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAA 47776 Query 111074 --GTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTG 111131 || || | ||||| || ||| || || || || ||||| ||||| | ||| Sbjct 47777 CTGTACGTTCG--ACATCACCACAGTGGATTCCCGCGGAGACACGCATTAACATGTGTTG 47834 Query 111132 A-GGCGTT 111138 | |||||| Sbjct 47835 AGGGCGTT 47842 >seq2 Length=1844256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 119497 CAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAG 119556 |||| ||| ||| | |||||||||| ||| ||||| ||||| |||||| || || | Sbjct 638203 CAAAATCTGCATGTAATCCTTCATCCCTAGATATGAGTTCATTGCTGAAGGTCAGACCTG 638262 Query 119557 GCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGC 119616 |||| | ||| || || || | ||| || | |||||||||||||| ||||| || || | Sbjct 638263 GCATCAATCCCCTCTTTTTCAACCAGAATAATGCACAAAAACTTCCGGAAAACAAAATTC 638322 Query 119617 CCTCCACACAGGCGAAAGCGA 119637 |||| || |||| | |||| Sbjct 638323 CCTCAACGGCGGCGTATGCGA 638343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975933740200