Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 266 4e-66 >seq5 Length=831028 Score = 266 bits (294), Expect = 4e-66 Identities = 734/1114 (66%), Gaps = 36/1114 (3%) Strand=Plus/Plus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||||||||| | || || || || || |||||||||| ||||| || || | ||| || Sbjct 46455 ATAGATGTTACTAGTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGAGAGGTAGA 46514 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 ||| || ||||| || |||| || | | ||| | | ||| | || || || | | | Sbjct 46515 GGCAGTAGGCATAGGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTCATTCTTGC 46574 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT------CCCACATATCAAA 106107 ||| || |||||||||| | |||||| | ||| | |||| | ||| || Sbjct 46575 CTTAAGGGCATCCCAGTCCCAA---AGCTTGTTATCAACAGTAGCACCCCAAAGATCGAA 46631 Query 106108 TTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167 || | | ||||| || | || ||||| | ||| ||||| ||| | ||| Sbjct 46632 CTGCAAAAGACCTTGAGAAGCAGGCGAACCTGGATATGAGTCATAATGACCATACTTTTC 46691 Query 106168 AGCCAATTCACAGCTCGCCTC---CAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 106224 ||||| | || | | ||| ||| | || | ||| || |||||||| ||||| Sbjct 46692 GGCCAA---AGAGATAGACTCATCCAGACACGCATAATAAATAGTTTCAAATATACGCTT 46748 Query 106225 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGC 106284 |||| |||| |||||||||| || ||||||| ||||| |||| || || ||| || Sbjct 46749 GTTCAGCTCCCTGGCTTCATCAGATTCAAATGGATAGCGCAACAACATGAACGTATCAGC 46808 Query 106285 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 106344 | ||||||||| || | ||||||||| ||||| || | ||| || | | || || Sbjct 46809 TAAACCTTGAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATACCTAGCTTCCTT 46868 Query 106345 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 || || || | ||||| ||||||| | |||| | ||| | |||| | || ||| Sbjct 46869 CACTGGGTAGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTAATGACACGTGAGAT 46928 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 106464 | | ||| || | |||||||||| ||| | ||| ||| || | || | || Sbjct 46929 CTTGTAAAGCTTCTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGC 46988 Query 106465 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 106524 |||||| ||||| || || ||||| || | |||| || |||| || |||||| Sbjct 46989 GATTGAAGCCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACAATTTCACA 47048 Query 106525 ACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGC 106584 |||||||||||| || || || |||| ||||||||||||| ||| |||||| || Sbjct 47049 GCACAAGTTGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGC 47108 Query 106585 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTT--GAGAATTGCCTTC 106642 ||||||||| ||||| || ||||| || || || | |||||| | ||||| | Sbjct 47109 ATCCTTGTAAAGCATATACGGCGTACCAGTTTC--AATTTGACTTTGTAAGATTGCAAAC 47166 Query 106643 CACACATCGGCGGCTGGTACAATGGCGTT--GGCCC-GTCCCTCCGCCTCGTACTTTGTG 106699 || | | || || |||| || ||||| || | || ||||| ||| Sbjct 47167 CATAACTTTTGTGCGGG---GATGGTCTTACGGCCCAAACCAGCTTGTTCATACTTGGTG 47223 Query 106700 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGACA 106758 || || || ||||| || |||||| | || | | |||| ||| || ||| || || Sbjct 47224 TAAAGAGCCTCAAATTCATCACCCCAGACTTCATACAAACCT-CTGCACTCGTCAGGGCA 47282 Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818 | |||| ||| | || ||||||| || ||||| || | || || ||||| || Sbjct 47283 CATGAGAGTCCAATTTTCATTAGCCTCAACGCGTTTCATAAACAAATCAGGGATCCATAG 47342 Query 106819 GGATGAAAAGAGATCTCT---ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 106875 | | ||||||||||| | | | ||||| |||| ||||| || | || Sbjct 47343 CGCATAGAAGAGATCTCTTGCTCTCAAATCCTCT---GCACCGTGGTTTTTGCGCAGATC 47399 Query 106876 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC- 106934 | | || | |||||||| ||||||||||| | ||| | || | || ||| ||| Sbjct 47400 CAACATCTTAAATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAACCCCTTCT 47459 Query 106935 --GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 || || | |||| ||||| || || | |||||| | || | |||||||| Sbjct 47460 TTTACCACCCCCCTGATCAACATACTTGGCGGTTGTGTTAAAGATACGCAACATTGGAAC 47519 Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATA 107026 |||||||| || || |||||||| ||||||||| Sbjct 47520 AATACCATTAGACTGTCCATTTGTACCCCGAATA 47553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980733627160