Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 136 9e-27 >seq2 Length=1844256 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||| |||||||| |||||||| | | || | || || || Sbjct 535053 AACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTC 534994 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || || | || || || || || |||||||| || |||||||| Sbjct 534993 CAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTG 534934 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| |||||| |||||||| ||||| | ||| |||||||| |||| ||||| Sbjct 534933 AATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTT 534874 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| ||||| || | |||||| Sbjct 534873 GCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||||||| ||| |||||||| ||||| || | ||||| | || || || Sbjct 534825 AACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTC 534766 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || ||||| || | | |||||||||||||| || || || |||||||| Sbjct 534765 CAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTCTTG 534706 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| |||||| |||||||| ||||| || || |||||||| | ||||| Sbjct 534705 AATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTT 534646 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| ||||| || | |||||| Sbjct 534645 GCCAGTGAGAGTCTTTACAAAAATTTGCAT 534616 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||| |||||||| || ||||| | ||||| | || || || Sbjct 1772188 AACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTC 1772129 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || || | | || ||||||||||||||||| |||||||| || Sbjct 1772128 CAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTG 1772069 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || ||||| ||||| || || |||||||| | ||||| Sbjct 1772068 AATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTT 1772009 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| ||||| || | |||||| Sbjct 1772008 GCCAGTGAGAGTCTTTACAAAAATTTGCAT 1771979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481472062903