Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 257 2e-63 >seq5 Length=831028 Score = 257 bits (284), Expect = 2e-63 Identities = 1189/1867 (64%), Gaps = 69/1867 (4%) Strand=Plus/Plus Query 46983 GTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAA 47042 || || || || | || | | |||| || ||| |||| |||||||| ||| || || | Sbjct 46078 GTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGTTTTGAGT 46137 Query 47043 CCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTA--GAATAACTAGGTTCTGAAA 47100 || |||||||||| || |||||||| || | ||| |||| | |||| | | Sbjct 46138 CCCTTTTTCCATCCATAAAAGTGCATACTTGTCAGTTTGCTGAATG--TTGGTTGTTCCA 46195 Query 47101 TATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTA 47160 | | |||||| || || || |||||| ||||| |||||||| || |||||||||| Sbjct 46196 TGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCCATATCTA 46255 Query 47161 AAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 || | |||| || ||||| |||||||| || | || || |||| | ||||| Sbjct 46256 TGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGTGGTGGGA 46315 Query 47221 GATT---AGTATTTTGAATAGATCCTCCgttttctataa--ttttgttttttaat-tcat 47274 | | ||| | | ||| || || | | |||| ||||| || || | || | Sbjct 46316 TTTCTTCAATATGTCTCAAAGAGCCGTTGTATGCAATAAGCTTTTGCTTCATAGTCTCGT 46375 Query 47275 ttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATT 47334 | ||| ||| | || || || | | ||| |||||||||| |||| Sbjct 46376 T---CCAGAGTCCAAGATCGACCAAGTCATTGAGCAAATGTGGATTAACAACAAAGAATT 46432 Query 47335 CTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTAT 47394 | || | ||| | | | ||| || ||||| |||||||| || | ||||||||||| Sbjct 46433 CACCGCTCAATACACGTCTGTAATAGATGTTACTAGTATATGGCTCGAAAGATTCATTAT 46492 Query 47395 TTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTA 47454 |||| ||||| |||| || || || |||||||| | || | ||||| ||||| | Sbjct 46493 TTCCCAAAATCTGAGAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGAGTTTCTCA 46552 Query 47455 CTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAA 47514 |||| ||||| || | ||| |||||||| | || | | ||| Sbjct 46553 AACCATGTTTTTTCATTCTTGCCTTAAGGGCATCCCAGTCCCAAAGCT-TGTT--ATCAA 46609 Query 47515 CATT------CCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 || | ||||| ||| | || | || |||| | || ||||| ||||| Sbjct 46610 CAGTAGCACCCCAAAGATCGAACTGCAAAAGACCTTGAGAAGCAGGCGAACCTGGATATG 46669 Query 47569 TTTTATAAGGACCGTATAGTTTAGC----GAGTTCACAACTTGCTTCCAATGCACT-ATA 47623 | |||| |||| || || || ||| | ||| | |||| ||| ||| Sbjct 46670 AGTCATAATGACCATACTTTTCGGCCAAAGAGATAG--ACT--CATCCAGA-CACGCATA 46724 Query 47624 ATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATA 47683 ||| || ||||||||||| |||| || | ||| ||||| |||||||| ||||| Sbjct 46725 ATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAGATTCAAATGGATA 46784 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 || ||||| || || |||||||| |||| |||||| || || ||| Sbjct 46785 GCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCCTGTGACG 46844 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 ||| ||| || |||||| | ||| || | |||| |||| || |||| || | Sbjct 46845 GAAATTTGAATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATTTGGTTCAA 46904 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAAT-TTATTAAAATCAAACTTGTTAT--- 47859 | || | | | || || || |||||||| | || | Sbjct 46905 ATTGTATGTAATGACACGTGAGATCT-TGTAAAGCTTCTTGAAATCAAAAGTCTTCTCCT 46963 Query 47860 --TTAT-AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTG 47916 |||| ||||||| || | || || || || | ||||| ||||| || || || Sbjct 46964 CCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAACTTCTTTGC 47023 Query 47917 GATTAGTATATTGTATTATTTCA--GCACATAGATTACCACATTTGATAGTACCCAAATT 47974 || |||||| |||| |||||| ||||| || || | |||| || ||||||| ||| Sbjct 47024 TATCAGTATACTGTACAATTTCACAGCACA-AG-TTGGAAGATTTTATGGTACCCAGATT 47081 Query 47975 TTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034 | || ||| ||| || || ||||||||||||||| | || || |||||||| Sbjct 47082 CTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCGTACCAGTTTC 47141 Query 48035 TATCTGAGATTCAATGATAGATTTCCA-AACA---GTCCTAGCCTT-TATAACAGCTCTA 48089 || ||| || | ||| | ||| ||| || | | | | | || || | | Sbjct 47142 AATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGATGGTCTTACGGCCCAA 47201 Query 48090 GCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTA 48149 | | | ||||| || || || || | |||||||||||| || | || | | Sbjct 47202 ACC-----AGCTTGTTCATACTTGGTGTAAAGAGCCTCAAATTCATCACCCCAGACTTCA 47256 Query 48150 TCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTA 48209 | || || || || | ||| ||||| | | ||||| |||| | | || | Sbjct 47257 TACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTCAACGCGT 47316 Query 48210 GTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTC 48268 ||||||| | ||| || ||||| || || ||| || | ||| || | ||| | || || Sbjct 47317 TTCATAAACAAATCAGGGATCCATAGCGC-ATAGAAGAGATCTCTTGCTCTCAAATCCTC 47375 Query 48269 ATTGCCACTATTCCTTTTA---AGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTC 48325 ||| || | |||| || || | | | | |||||| ||||||||||| || Sbjct 47376 --TGC-ACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCATGGCTC 47432 Query 48326 TAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGT 48385 |||||||| || | ||| || |||| ||| || ||||| | ||| |||| || Sbjct 47433 CAAATATATGGCAAACGAACCCCTTCTTTTACCACCCCCCTGATCAACATACTTGGCGGT 47492 Query 48386 ATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAAT 48445 ||||| | | | |||||||| ||||||||||| || ||||| || ||| ||| Sbjct 47493 TGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGTCCATTTGTACCCCGAAT 47552 Query 48446 ATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGA 48505 ||| ||||| || | ||| || ||||| || ||||| ||||| || ||| Sbjct 47553 ATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCTGATTTGCT 47612 Query 48506 TATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATT 48565 || | |||||| | | || |||| |||||||| | | | ||||||| ||||| Sbjct 47613 GATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCTTGCATATC 47672 Query 48566 TAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGA 48625 || | |||||| ||||||||| || || ||||||| |||||||| ||||||| Sbjct 47673 CAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGCGTTGGAGT 47732 Query 48626 TGCATGAATAAACCATTTCT--CTGATAACAATTTATATGTTTCAATAACAGAATCTATA 48683 || || |||| | || | || || | | | |||||||||| | || | | Sbjct 47733 AGCGTGTGTAAAAAACTTTTGGCTCATTA--AGTGGTATGTTTCAACTGTACGTTCGACA 47790 Query 48684 TC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 || ||| | || || || || |||||||||||||| | |||||| | ||| || || Sbjct 47791 TCACCACAG-TGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTCCACGAT 47849 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||||| || | ||| | ||| || ||||||||||||||| ||||| || | ||| Sbjct 47850 CTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTAATCGTA 47909 Query 48803 -TGAAAA 48808 |||||| Sbjct 47910 CTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108736762760